View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 108_6_68 (Length: 211)
Name: 108_6_68
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 108_6_68 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 42631137 - 42631347
Alignment:
| Q |
1 |
aacccaaaagaaaaatacaaaacaaaaggaccagcaaaatcagaaccagactccttaaaatccaagaccttgccatgtttatgtttaatctgattagcta |
100 |
Q |
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| T |
42631137 |
aacccaaaagaaaaatacaaaacaaaaggaccagcaaaatcagaaccagactccttaaaatccaagaccttgccatgtttatgtttaatctgattagcca |
42631236 |
T |
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| Q |
101 |
gtgcaccaccccatataatagatccaagaacagcaaccacactaattcccacaatccctcttttctttctactcttgaaactgaaatccattgtgtaacc |
200 |
Q |
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| T |
42631237 |
atgcaccaccccatataatagatccaagaacagcaaccacactaattcccacaatccctcttttctttctactcttgaaactgaaatccattgtgtaacc |
42631336 |
T |
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| Q |
201 |
aatcccaattg |
211 |
Q |
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| T |
42631337 |
aatcccaattg |
42631347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 42638281 - 42638491
Alignment:
| Q |
1 |
aacccaaaagaaaaatacaaaacaaaaggaccagcaaaatcagaaccagactccttaaaatccaagaccttgccatgtttatgtttaatctgattagcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42638281 |
aacccaaaagaaaaatacaaaacaaaaggaccagcaaaatcagaaccagactccttaaaatccaagaccttgccatgtttatgtttaatctgattagcca |
42638380 |
T |
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| Q |
101 |
gtgcaccaccccatataatagatccaagaacagcaaccacactaattcccacaatccctcttttctttctactcttgaaactgaaatccattgtgtaacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42638381 |
atgcaccaccccatataatagatccaagaacagcaaccacactaattcccacaatccctcttttctttctactcttgaaactgaaatccattgtgtaacc |
42638480 |
T |
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| Q |
201 |
aatcccaattg |
211 |
Q |
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| T |
42638481 |
aatcccaattg |
42638491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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