View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 11737-6_low_1 (Length: 616)
Name: 11737-6_low_1
Description: 11737-6
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 11737-6_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 362 - 609
Target Start/End: Complemental strand, 27572506 - 27572257
Alignment:
| Q |
362 |
ttacgaaatgttgattttgtgattcacactccttgtatataagtagaaaataatacaccaattgccatatgtaaaatgaattgattctttttcaaatgca |
461 |
Q |
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| T |
27572506 |
ttacgaaatgttgattttgtgattcacactccttgtatataagtagaaaataatacaccaattgccatatgtaaaatgaattgattctttttcaaatgca |
27572407 |
T |
|
| Q |
462 |
tatattgcattatttcttatagaataatgttaatgattctcgtaaatgttgcttctattaaacccatttgtgttagcatggtgttattgacttggaaatt |
561 |
Q |
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| T |
27572406 |
tatattgcattattgcttatagaataatgttaatgattctcgtaaatgttgcttctattaaactcatttgtgttagcatggtggtattgacttggaagtt |
27572307 |
T |
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| Q |
562 |
gggagtgagttcatcctcaatcctcaaggtct--ggttcgattatctctg |
609 |
Q |
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| T |
27572306 |
gggagtgtgttcatcctaaatcctcaaggtctcaggttcgattttctctg |
27572257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 81 - 205
Target Start/End: Complemental strand, 27572630 - 27572504
Alignment:
| Q |
81 |
caaaaatttgtcactgataaatataataaataaataatgagttccactatgta--gttaatatcaactggatatgaatttggttgaaaaactttttccac |
178 |
Q |
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| T |
27572630 |
caaaaatttgtcactgataaatataataaataaataatgagttccactatgtatagttaatatcaactggatatgaatttggttgaaaaactttttccac |
27572531 |
T |
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| Q |
179 |
gttaaaataacaaaaatatatacatta |
205 |
Q |
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| T |
27572530 |
gttaaaataacaaaaatatatacatta |
27572504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 27573639 - 27573571
Alignment:
| Q |
17 |
cttgtatgccattttcccttacggttgattaaacattcttaaaatgcaaatcacacttgcaaaccaaaa |
85 |
Q |
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| T |
27573639 |
cttgtatgccattttcccttacggttgattatacattcttaaaatgcaaatcacacttgcaacccaaaa |
27573571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 22396955 - 22397016
Alignment:
| Q |
151 |
atgaatttggttgaaaaactttttccacgttaaaataacaaaaatatatacattataaatat |
212 |
Q |
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| T |
22396955 |
atgatttttgttgaaaaactctttccgtattaaaataacaaaaatatatattttataaatat |
22397016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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