View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: 11737-6_low_2 (Length: 254)
Name: 11737-6_low_2
Description: 11737-6
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] 11737-6_low_2
[» ] chr8 (1 HSPs)
Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 40498148 - 40497909
Alignment:
Q
15
atgaacaacacatatcccagttctttaataattctcgtttgtttaattttcctctacaatatagtgtcctggtaaacttgtttttgtatattcttacttt
114
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
T
40498148
atgaacaacacatatcccagttctttaataattctcgtttgtttaattttcctctacaatatagtgtcctagtaaacttgtttttgtatattcttacttt
40498049
T
Q
115
catattggtaaccaaaaggtacgttgtttctttgttttgtgttgccatgtttcaaagactcttttgtaacataacatgtacttagtagtaaattaactct
214
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
T
40498048
catattggtaaccaaaaggtacgttgtttctttgttttgtgttgccatgtttcaaagactcttttgtaacataacatgtacttagtagtaatttaactct
40497949
T
Q
215
atttcatttttgaacagattttggcatctaatggcaaata
254
Q
||||||||||| |||||||||||| || ||||||||||||
T
40497948
atttcattttttaacagattttggtatttaatggcaaata
40497909
T
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