View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: 11737_high_1 (Length: 701)
Name: 11737_high_1
Description: 11737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 11737_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 378 - 687
Target Start/End: Original strand, 28240009 - 28240318
Alignment:
| Q |
378 |
gcacatctaaacgatgtgttaagttttgctttttccttatttttctgttacatgatttatgctaggaattcatgggaagaaatttccttgctatgaatgt |
477 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28240009 |
gcacatctaaacgatgtgttaagtttttctttttccttattttgctgttacatgatttatgctaggaattcatgggaagaaatttccttgctatgaatgt |
28240108 |
T |
|
| Q |
478 |
catgtggaagtacatggagcaggtaatacaactcttgtgcttacagcttttattttctttggatatgacatgttaactaagtatattgatttcaatgaaa |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28240109 |
catgtggaagtacatggagcaggtaatacaactcttgtgcttacagcttttattttctttggatatgacatgttaactaagtatattgatttcaatgaaa |
28240208 |
T |
|
| Q |
578 |
tgtaaatttcagacatcaagataaaaagaaagggaaatatactacacaacaactctttgcaagattttttgtcataagttgatataatactgactcttag |
677 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28240209 |
tgtaaatttcagacatcaagataaaaagaaagggaaatatactacacaacaactctttgcaagattttttgtcataagttgctataatactgactcttag |
28240308 |
T |
|
| Q |
678 |
ttagaataat |
687 |
Q |
| |
|
|||||||||| |
|
|
| T |
28240309 |
ttagaataat |
28240318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 28239649 - 28239945
Alignment:
| Q |
18 |
aaatacaggttctcagtgttgagaataatgcattgagtatcaacttcccattgatgtgctctcaatctggcttttcttctttcnnnnnnnnagaaaaatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28239649 |
aaatacaggttctcagtgttgagaataatgcattgagtatcaacttcccattgatgtgctctcaatctggcttttcttctttcttttttttagaaaaatg |
28239748 |
T |
|
| Q |
118 |
atcaggtgaatagtgacaggctcagagaaagtctcgagaaaatagtcggtacagatgattcgaggtttagtggatttgaccttgctactcttatcaggaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28239749 |
atcaggtgaatagtgacaggctcagagaaagtctcgagaaaatagtcggtacagatgattcgagatttagtggatttgaccttgctactcttatcaggaa |
28239848 |
T |
|
| Q |
218 |
caaatatgggaaatcttatgatgtccagttgattaagaaggttagtttcttacaagaggaattacatgagagataagtgagaaattgatatgcctgc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28239849 |
caaatatgggaaatcttatgatgtccagttgattaagaaggttagtttcttacaagtggaattacatgagagataagtgagaaattgatatgcctgc |
28239945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2255 times since January 2019
Visitors: 847