View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 11737_high_2 (Length: 462)
Name: 11737_high_2
Description: 11737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 11737_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 930233 - 929795
Alignment:
| Q |
1 |
agtagtcgtggtgcaagcaagaccgtggcagaacagtacgtactataacagtcaaaaagtgttaaactagaaatcaacaacaaaaagcaagtctaaggtg |
100 |
Q |
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| T |
930233 |
agtagttgtggtgcaagcaagaccgtggcagaacagtacgtactataacagtcaaaaagtgttaaactagaaatcaacaacaaaaagcaagtctaaggtg |
930134 |
T |
|
| Q |
101 |
taggatacaccaatataattgacttaggataaccaannnnnnnnnnnnnn-gaataaaagataagtaaaacacgccattgatatataatcatggtatata |
199 |
Q |
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| T |
930133 |
taggatacaccaatataattgactcaggataaccaattttttttgttttttgaataaaagattagtaaaacacgccattgatatataatcatggtatata |
930034 |
T |
|
| Q |
200 |
ctatacagtggaatcatgtatttcaacacttccaaaactgatgaaaaatagcatatctatagttaatcacaattaacattcacaattaatatcaacaatg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
930033 |
ctatacagtggaatcatgtatttcaacacttccaaaactgatgaaaaatagcatatctatagttaatcacaattaacattcacaattaatatcaacaatg |
929934 |
T |
|
| Q |
300 |
aacatcattaacaacaactaatacaacatgatttggagatgatcataaaataaagaaataatcgatataatcaagatgattattgaagagtatcaacaaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
929933 |
aacatcattaacaacaactaatacaacatgatttggagatgatcataaaataaagaaataatcgatataatcaagatgattattgaagagtatcaacaaa |
929834 |
T |
|
| Q |
400 |
ctcggtagcatcgacacccctgatcaaagatgtgttaga |
438 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| |
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| T |
929833 |
ctcggtagcatcgacacccctgatcaaagacgtgttaga |
929795 |
T |
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