View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 11737_high_4 (Length: 339)
Name: 11737_high_4
Description: 11737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 11737_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 930566 - 930228
Alignment:
| Q |
1 |
ccactcttatccaaaaatcagactttgaaataataatttagaaagatatatacaaagataaacggatttaaacaaatgttggcccctgttcgaggtggtt |
100 |
Q |
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| T |
930566 |
ccactcttatccaaaaatcagactttgaaacaataatttagaaagatatatacaaagataaacggatttaaacaaatgttggcccctgttcgaggtggtt |
930467 |
T |
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| Q |
101 |
tttgtgttatattttgaaattttcataatgtaacaacctcagatatagnnnnnnnngtcaaaattaacaagaaacataacagcagcaatattgattgcac |
200 |
Q |
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| T |
930466 |
tttgtgttatattttgaaattttcataatgtaacaacctcggatatagttttttttgtcaaaattaacaagaaacataacagcagcaatattgattgcac |
930367 |
T |
|
| Q |
201 |
aaagctaaaaatcgtttgtggataatatgattacctgagaacaaacaacaatatgaactggattgatcacttggaatggccgatacacgaatggtgacgc |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
930366 |
aaagctaaaaaccgtttgtggataatatgattacctgagaacaaacaacaatatgaactggattgatcacttggaatggccgatacacgaatggtgacgc |
930267 |
T |
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| Q |
301 |
acacaggaacaacctcgtgagatgaaacttgaaagtagt |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
930266 |
acacaggaacaacctcgtgagatgaaacttgaaagtagt |
930228 |
T |
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