View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 451Eco28 (Length: 291)
Name: 451Eco28
Description: NF0451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 451Eco28 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 17023311 - 17023033
Alignment:
| Q |
10 |
tataacataagaaaaaacattagataagaaattatattaagattaatttatatggagtttgaaataatatcaaatacatataatgtaactaaccataaca |
109 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
17023311 |
tataacataagaaaaaacaagagataagaaattatattaagatgattttatatggagtttgaaataatatgaaatacatataatgtaactaatcataaca |
17023212 |
T |
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| Q |
110 |
ctctttcctttcgatatagctttagagacattagagaaccattcaaatggatacaataagggcattagctcaggattttgttgtgcttcaaatatgagag |
209 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17023211 |
ctctttcctttggatatagctttagagacatcagagaaccattcaaacggatacagtaagggcattagctcaggattttgttgtgcttcaaatatgagag |
17023112 |
T |
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| Q |
210 |
gatttatattcatatgttgcataacaaatcctattggaatgtacatgtccttagcaggtcttggtatagagatcaattg |
288 |
Q |
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| T |
17023111 |
gatttatattcatatcttgcatagcaaatcctattggaatgtacatgtcctctgcaggtcttggtatagagatcaattg |
17023033 |
T |
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Target: scaffold0003 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 116721 - 117000
Alignment:
| Q |
10 |
tataacataagaaaaaacattagataagaaatta-tattaagattaatttatatggagtttgaaataatatcaaatacatataatgtaactaaccataac |
108 |
Q |
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||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
116721 |
tataacaaaagaaaaaacaatagataagaaattaatattaagattattttatatggagtttgaaataatatcaaatacatataatgtaactaaccataac |
116820 |
T |
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| Q |
109 |
actctttcctttcgatatagctttagagacattagagaaccattcaaatggatacaataagggcattagctcaggattttgttgtgcttcaaatatgaga |
208 |
Q |
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|||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
116821 |
actctttcctttggatatagttttagagacatcagagaaccattcaaacggatacaataagggcattagctcaggatttcgctgtgcttcaaatatgaga |
116920 |
T |
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| Q |
209 |
ggatttatattcatatgttgcataacaaatcctattggaatgtacatgtccttagcaggtcttggtatagagatcaattg |
288 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||| | || |||||||||||||||||||||||| |
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| T |
116921 |
ggatttatattcatatgttgcatagcaaatcttattggaatgtacatgtcttcagtaggtcttggtatagagatcaattg |
117000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 61 - 288
Target Start/End: Complemental strand, 11404087 - 11403860
Alignment:
| Q |
61 |
atggagtttgaaataatatcaaatacatataatgtaactaaccataacactctttcctttcgatatagctttagagacattagagaaccattcaaatgga |
160 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
11404087 |
atggagtttgaaataatatcaaatacatataatgtaactaaccataacactctctcctttggatatagctttagagacatcagagaaccattcaaatgga |
11403988 |
T |
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| Q |
161 |
tacaataagggcattagctcaggattttgttgtgcttcaaatatgagaggatttatattcatatgttgcataacaaatcctattggaatgtacatgtcct |
260 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
11403987 |
tacagtaagggcattagctcaggattttgttgtgcttcaaatatgagaggatttatatttatatgttgcatagcaaatcctattggaatgtacatgtcct |
11403888 |
T |
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| Q |
261 |
tagcaggtcttggtatagagatcaattg |
288 |
Q |
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| T |
11403887 |
cagcaggtcttggtataaagatcaattg |
11403860 |
T |
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