View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 454-NF4349-Insertion-24 (Length: 108)
Name: 454-NF4349-Insertion-24
Description: 454-NF4349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 454-NF4349-Insertion-24 |
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| [»] chr8 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 104; Significance: 2e-52; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 2e-52
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 14183085 - 14183192
Alignment:
| Q |
1 |
ctaaaactgtgataggatgtggaactgataatacagtgtcatttgaaggtgcaagttctggtatagttggccttggaggtggaccagcatctcttattac |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14183085 |
ctaaaactgtgataggatgtggaactgacaatacagtgtcatttgaaggtgcaagttctggtatagttggccttggaggtggaccagcatctcttattac |
14183184 |
T |
|
| Q |
101 |
acaattgg |
108 |
Q |
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|||||||| |
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| T |
14183185 |
acaattgg |
14183192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 40717842 - 40717945
Alignment:
| Q |
1 |
ctaaaactgtgataggatgtggaactgataatacagtgtcatttgaaggtgcaagttctggtatagttggccttggaggtggaccagcatctcttattac |
100 |
Q |
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||||||||||||||||||||||||| | ||||||||||| ||| |||||||||| |||||||||||||||||||||||||| || | |||||||| || |
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| T |
40717842 |
ctaaaactgtgataggatgtggaaccaacaatacagtgtcgtttaaaggtgcaagctctggtatagttggccttggaggtggtcccgtgtctcttataac |
40717941 |
T |
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| Q |
101 |
acaa |
104 |
Q |
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|||| |
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| T |
40717942 |
acaa |
40717945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 14192030 - 14192130
Alignment:
| Q |
8 |
tgtgataggatgtggaactgataatacagtgtcatttgaaggtgcaagttctggtatagttggccttggaggtggaccagcatctcttattacacaattg |
107 |
Q |
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| T |
14192030 |
tgtgataggatgtggaactaacaatattttgtcctatgaaggcgcaagctctggtatcgttggcttcggaagtggacccgcgtcttttatcactcaattg |
14192129 |
T |
|
| Q |
108 |
g |
108 |
Q |
| |
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| |
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| T |
14192130 |
g |
14192130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 34302796 - 34302903
Alignment:
| Q |
1 |
ctaaaactgtgataggatgtggaactgataatacagtgtcatttgaaggtgcaagttctggtatagttggccttggaggtggaccagcatctcttattac |
100 |
Q |
| |
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|||||||||| ||||||||||||||| | |||| || ||| ||| || | | ||| |||||| |||||||||||||||||||||| |||||||| || || |
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| T |
34302796 |
ctaaaactgttataggatgtggaactaacaatatagggtcgtttaaacgcgtaagctctggtgtagttggccttggaggtggacctgcatctctaataac |
34302895 |
T |
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| Q |
101 |
acaattgg |
108 |
Q |
| |
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|||||||| |
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| T |
34302896 |
acaattgg |
34302903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 34665832 - 34665939
Alignment:
| Q |
1 |
ctaaaactgtgataggatgtggaactgataatacagtgtcatttgaaggtgcaagttctggtatagttggccttggaggtggaccagcatctcttattac |
100 |
Q |
| |
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||||||| |||||||| ||||||||||||||| | | | | |||| ||||||||| ||||||||||||||||||||||| || || | ||||| || || |
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| T |
34665832 |
ctaaaacagtgataggttgtggaactgataatgcggggacgtttggaggtgcaagctctggtatagttggccttggaggcgggccggtgtctctcataac |
34665931 |
T |
|
| Q |
101 |
acaattgg |
108 |
Q |
| |
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|||||||| |
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|
| T |
34665932 |
acaattgg |
34665939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 34646146 - 34646245
Alignment:
| Q |
9 |
gtgataggatgtggaactgataatacagtgtcatttgaaggtgcaagttctggtatagttggccttggaggtggaccagcatctcttattacacaattgg |
108 |
Q |
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|||||||| ||||||||||||||| | | | | |||| ||| ||||| ||||||||||||||||||||||| || || | ||||| || |||||||||| |
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| T |
34646146 |
gtgataggttgtggaactgataatgcggggacgtttggaggcgcaagctctggtatagttggccttggaggcgggccggtgtctctcataacacaattgg |
34646245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 45645334 - 45645441
Alignment:
| Q |
1 |
ctaaaactgtgataggatgtggaactgataatacagtgtcatttgaaggtgcaagt-tctggtatagttggccttggaggtggaccagcatctcttatta |
99 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||| | ||| |||| ||||||| | ||||||||||| ||||||||||||||||||| ||||| || | |
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| T |
45645334 |
ctaaaactgtgataggatgtggaaataacaatacgg-gtcgtttggaggtgcagggctctggtatagtgggccttggaggtggaccagtgtctctaataa |
45645432 |
T |
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| Q |
100 |
cacaattgg |
108 |
Q |
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||||||||| |
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| T |
45645433 |
cacaattgg |
45645441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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