View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 454-NF4349-Insertion-3 (Length: 286)
Name: 454-NF4349-Insertion-3
Description: 454-NF4349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 454-NF4349-Insertion-3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 38140441 - 38140358
Alignment:
| Q |
204 |
gggagagcaaagtatagcgtactttctgccaagctgccaatgc-aaacatttcccataagtttttcaagccaaaactctgtttg |
286 |
Q |
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| T |
38140441 |
gggagagcaaagtatagcgtactttctgccaagctgccaatgcaaaacatttcccataagtttttcaagccaaaactctgtttg |
38140358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 38164914 - 38164836
Alignment:
| Q |
115 |
ttccaccatagaaagacgttgcatgagctttctgccaagctgctgatgctactcttacttcccaggtgaacaatcccacaag |
196 |
Q |
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| T |
38164914 |
ttccaccatagaaag---ttgcatgagctttctgccaagctgctgattctactcttacttctgaggtgaacaaccccacaag |
38164836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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