View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 454-NF4349-Insertion-4 (Length: 266)
Name: 454-NF4349-Insertion-4
Description: 454-NF4349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 454-NF4349-Insertion-4 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 36934894 - 36934630
Alignment:
| Q |
1 |
atgtgtccacatctagcagcaacatgcaaggcactatcgattgtttttgttaagtttgaacaaaagttttggagcacgttccattacaagattcacaatg |
100 |
Q |
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||||||||| |||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
36934894 |
atgtgtccatatctagcagcaacatgtaaggcactatc-attgttttcgttaaacttgaacaaaagttttggagcatgttcaattacaagattcacaatg |
36934796 |
T |
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| Q |
101 |
tcatctttaccatacgaagctgcaatatgtagcactgtattttgcataggggtctcaatttttgttaaattagagaaatccaacaaattcgttgaaactc |
200 |
Q |
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|||| ||||||||| || |||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
36934795 |
tcattattaccataccaaactgcaatatgtagcactgtattttccataggagtctcaatttttgttaatttagagaaatccaacaagttcgttgaaactc |
36934696 |
T |
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| Q |
201 |
catataccaagagatatgctttactaagcaaatcaatttgattgtcaaattcgcaacattttggaa |
266 |
Q |
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| T |
36934695 |
catataccaagagatatgctttactaagcaaatcaatttgattgtcaaatttgcaacattctggaa |
36934630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 36963778 - 36963530
Alignment:
| Q |
1 |
atgtgtccacatctagcagcaacatgcaaggcactatcgattgtttttgttaagtttgaacaaaagttttggagcacgttccattacaagattcacaatg |
100 |
Q |
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|||||||||| ||| ||||||||||| |||| ||||| |||||||||||| | | |||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
36963778 |
atgtgtccacctcttgcagcaacatgtaaggggctatc-attgtttttgttgaatgtgaacaaaagttttggagcatgttcaattacaagattcacaatg |
36963680 |
T |
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| Q |
101 |
tcatctttaccatacgaagctgcaatatgtagcactgtattttgcataggggtctcaatttttgttaaattagagaaatccaacaaattcgttgaaactc |
200 |
Q |
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| T |
36963679 |
tcatctttaccatacgaagctgcaatatgtagcactgtattttgcataggggtctcaatttttgttaaattagagaaatccaacaaattcgttgaacctc |
36963580 |
T |
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| Q |
201 |
catataccaagagatatgctttactaagcaaatcaatttgattgtcaaat |
250 |
Q |
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| T |
36963579 |
catacaccaagtgatatgcttcactgagcaaattaacttgattgtcaaat |
36963530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 36946455 - 36946209
Alignment:
| Q |
1 |
atgtgtccacatctagcagcaacatgcaaggcactatcgattgtttttgttaagtttgaacaaaagttttggagcacgttccattacaagattcacaatg |
100 |
Q |
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| T |
36946455 |
atgtgtccacctcttgcagcaacatgtaaggggctatc-attgtttttgttgaatgtgaacaaaagttttggagaatgttcaattacaagattcacaatg |
36946357 |
T |
|
| Q |
101 |
tcatctttaccatacgaagctgcaatatgtagcactgtattttgcataggggtctcaatttttgttaaattagagaaatccaacaaattcgttgaaactc |
200 |
Q |
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| T |
36946356 |
tcattattaccatacgaagctgcaatatgtaacactgtatttttcgtaggggtctcaatttctaataaattagaggaacccaacaaattcgttgaacctc |
36946257 |
T |
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| Q |
201 |
catataccaagagatatgctttactaagcaaatcaatttgattgtcaa |
248 |
Q |
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| T |
36946256 |
catacaccaagtgatatgcttcactaagcaaattaacttgattgtcaa |
36946209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 36952360 - 36952096
Alignment:
| Q |
1 |
atgtgtccacatctagcagcaacatgcaaggcactatcgattgtttttgttaagtttgaacaaaagttttggagcacgttccattacaagattcacaatg |
100 |
Q |
| |
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|||||||||| ||| ||||||||||| ||||||||||| |||||||||||||| | |||||||||||||||||||| |||| | |||||||||||||||| |
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| T |
36952360 |
atgtgtccacctcttgcagcaacatgtaaggcactatc-attgtttttgttaaatgtgaacaaaagttttggagcatgttcaactacaagattcacaatg |
36952262 |
T |
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| Q |
101 |
tcatctttaccatacgaagctgcaatatgtagcactgtattttgcataggggtctcaatttttgttaaattagagaaatccaacaaattcgttgaaactc |
200 |
Q |
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| T |
36952261 |
gcattattaccattccaagctgcaatatgtagcacggtatttttcacaggtgtctcaattttatttaaattagtggaacccaacaaattcgttgaaaccc |
36952162 |
T |
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| Q |
201 |
catataccaagagatatgctttactaagcaaatcaatttgattgtcaaattcgcaacattttggaa |
266 |
Q |
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| T |
36952161 |
cataaaccaagttgtatgcttcactaatcaaattaatttgattatcaaattcgcaacagtttggaa |
36952096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 37081616 - 37081746
Alignment:
| Q |
1 |
atgtgtccacatctagcagcaacatgcaaggcactatcgattgtttttgttaagtttgaacaaaagttttggagcacgttccattacaagattcacaatg |
100 |
Q |
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|||||||||| ||| ||||||| ||| || ||||| ||| ||||||| |||| | ||||||||||||||||||| |||| ||||||||| ||||||| |
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| T |
37081616 |
atgtgtccacctcttgcagcaatatgtaacgcactctcg-ttgttttcattaacctcgaacaaaagttttggagcatgttcaattacaagactcacaatc |
37081714 |
T |
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| Q |
101 |
tcatctttaccatacgaagctgcaatatgtag |
132 |
Q |
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| T |
37081715 |
ttatcattgccataccaagctgatatatgtag |
37081746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 37071865 - 37071998
Alignment:
| Q |
1 |
atgtgtccacatctagcagcaacatgcaaggcactatcgattgtttttgttaagtttgaacaaaagttttggagcacgttccattacaagattcacaatg |
100 |
Q |
| |
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|||||||||||||| ||||||| ||| || ||||| || |||||||| |||| | |||||||||| |||||||| |||| | ||||||| ||||||| |
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| T |
37071865 |
atgtgtccacatcttgcagcaatatgtaacgcactctc-attgttttcattaaactcgaacaaaagtgttggagcatgttcaactacaagactcacaatc |
37071963 |
T |
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| Q |
101 |
tcatctttaccatacgaagctgcaatatgtagcac |
135 |
Q |
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| ||| || |||| | |||||| ||||||||||| |
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| T |
37071964 |
ttatcattgccattctgagctgctatatgtagcac |
37071998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 12495690 - 12495834
Alignment:
| Q |
16 |
gcagcaacatgcaaggcactatcgattgtttttgttaagtttgaacaaaagttttggagcacgttccattacaagattcacaatgtcatctttaccatac |
115 |
Q |
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| T |
12495690 |
gcagcaacatgaaatgcactatc-attgtttttgttaaatttaaacaaaagttttggaacacgttcaattacaagattcacaatttcattattaccatac |
12495788 |
T |
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| Q |
116 |
gaagctgcaatatgtagcactgtattttgcataggggtctcaattt |
161 |
Q |
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| T |
12495789 |
caagctgcaatatgtagcactgtattttccataggagtctcaattt |
12495834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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