View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 454-NF4349-Insertion-6 (Length: 230)
Name: 454-NF4349-Insertion-6
Description: 454-NF4349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 454-NF4349-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 4 - 177
Target Start/End: Complemental strand, 42656983 - 42656810
Alignment:
| Q |
4 |
ataatatacattactacttcattggaaataatatagagctctttttggattgtgcgctcaacatgtagcgtgagagacggagaatattctcacaaatctt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42656983 |
ataatatacattactacttcattggaaataatatagagctctttttggattgtgcgctcaacatgtagcgtgagagacggagaatattctcacaaatctt |
42656884 |
T |
|
| Q |
104 |
ccttcaaattttcaattaaatattataccactcaattatagtagcactggtttttcataccaaaaaataagagt |
177 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42656883 |
ccttcaaattttcaattatatattataccactcaattatagtagcactggtttttcataccaaaaaataagagt |
42656810 |
T |
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