View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: 454-NF4352-Insertion-3 (Length: 241)
Name: 454-NF4352-Insertion-3
Description: 454-NF4352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 454-NF4352-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 31 - 232
Target Start/End: Complemental strand, 15398822 - 15398620
Alignment:
| Q |
31 |
ttaagatgcaaatcttctaggttaggacaagaagaaagaaagtttatgtaatcgttccaattttgaaagctaacgtaattcaacttcagggatttcagag |
130 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| |
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| T |
15398822 |
ttaagacgcaaatcttctaggttaggacaagatgaaagaaagtttatgtaatcgttccaattttcaaatctaacgcgattcaacttcagggatttcagag |
15398723 |
T |
|
| Q |
131 |
atggaagattaacgcccgaagtatcatttccaatgtttaacatcgaaagtttgagaatagttagtgttttggagatg-aaatgatgggcttcaagatgtg |
229 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
15398722 |
atggaagattaacgcacgaagtatcatttccaacttttaacatcaaaagtttgagaatagttagtgttttggagatgaaaatgatgggcttcaaggtgtg |
15398623 |
T |
|
| Q |
230 |
gaa |
232 |
Q |
| |
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||| |
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| T |
15398622 |
gaa |
15398620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 31 - 232
Target Start/End: Complemental strand, 15410609 - 15410407
Alignment:
| Q |
31 |
ttaagatgcaaatcttctaggttaggacaagaagaaagaaagtttatgtaatcgttccaattttgaaagctaacgtaattcaacttcagggatttcagag |
130 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| |
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| T |
15410609 |
ttaagacgcaaatcttctaggttaggacaagatgaaagaaagtttatgtaatcgttccaattttcaaatctaacgcgattcaacttcagggatttcagag |
15410510 |
T |
|
| Q |
131 |
atggaagattaacgcccgaagtatcatttccaatgtttaacatcgaaagtttgagaatagttagtgttttggagatg-aaatgatgggcttcaagatgtg |
229 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
15410509 |
atggaagattaacgcacgaagtatcatttccaacttttaacatcaaaagtttgagaatagttagtgttttggagatgaaaatgatgggcttcaaggtgtg |
15410410 |
T |
|
| Q |
230 |
gaa |
232 |
Q |
| |
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||| |
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| T |
15410409 |
gaa |
15410407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 3255444 - 3255502
Alignment:
| Q |
36 |
atgcaaatcttctaggttaggacaagaagaaagaaagtttatgtaatcgttccaatttt |
94 |
Q |
| |
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|||||||||||||||| ||||||||| | | ||||| ||||| ||||| |||||||||| |
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| T |
3255444 |
atgcaaatcttctaggataggacaagcatagagaaaatttatataatcattccaatttt |
3255502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 10415981 - 10415923
Alignment:
| Q |
36 |
atgcaaatcttctaggttaggacaagaagaaagaaagtttatgtaatcgttccaatttt |
94 |
Q |
| |
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|||||||||||||||| ||||||||| | |||||| ||||||||||| |||| ||||| |
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|
| T |
10415981 |
atgcaaatcttctaggataggacaagcatgaagaaaatttatgtaatcattccgatttt |
10415923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 14018187 - 14018063
Alignment:
| Q |
40 |
aaatcttctaggttaggacaagaagaaagaaagtttatgtaatcgttccaattttgaaagctaacgtaattcaacttcagggatttcagagatggaagat |
139 |
Q |
| |
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|||||||||||| |||||||| | ||||||| ||||| ||||| |||||||||| ||| ||| || | ||| ||||||| ||| || || ||||||| |
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| T |
14018187 |
aaatcttctaggataggacaaccataaagaaaatttatataatcattccaattttcaaaagaaacatattccaaattcagggttttgagtgacggaagat |
14018088 |
T |
|
| Q |
140 |
taacgcccgaagtatcatttccaat |
164 |
Q |
| |
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||| | ||||||||| ||| |||| |
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|
| T |
14018087 |
caacacacgaagtatccttttcaat |
14018063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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