View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: 454-NF4353-Insertion-13 (Length: 125)
Name: 454-NF4353-Insertion-13
Description: 454-NF4353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] 454-NF4353-Insertion-13 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 115; Significance: 7e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 7e-59
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 52340678 - 52340556
Alignment:
| Q |
3 |
caactatataccacaacatcacaattcacaaaacaatgctatattatattgtcaagaacataataatctcgaaatcatgctataattagggagcaatggc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52340678 |
caactatataccacaacatcacaattcacaaaacaatgcaatattatattgtcaagaacataataatctcgaaatcatgctataattagggagcaatggc |
52340579 |
T |
|
| Q |
103 |
tacaccgtctatgacctcattgg |
125 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
52340578 |
tacaccgtctgtgacctcattgg |
52340556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 3e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 9190481 - 9190384
Alignment:
| Q |
28 |
tcacaaaacaatgctatattatattgtcaagaacataataatctcgaaatcatgctataattagggagcaatggctacaccgtctatgacctcattgg |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9190481 |
tcacaaaacaatgctatattatattgtcaagaacataataatctcgaaatcatgctataattagggagcaatggctacaccgtctgtgacctcattgg |
9190384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 1e-41
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 9181351 - 9181254
Alignment:
| Q |
28 |
tcacaaaacaatgctatattatattgtcaagaacataataatctcgaaatcatgctataattagggagcaatggctacaccgtctatgacctcattgg |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
9181351 |
tcacaaaacaatgctatattatattgtcaagaacataataatctcgaaaacatgctataattagggagcaatggctacaccgtctgtgacgtcattgg |
9181254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2253 times since January 2019
Visitors: 847