View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: D611-LTR4-TNT-insertion-1 (Length: 713)
Name: D611-LTR4-TNT-insertion-1
Description: D611-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] D611-LTR4-TNT-insertion-1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 689; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 689; E-Value: 0
Query Start/End: Original strand, 12 - 708
Target Start/End: Complemental strand, 36453355 - 36452659
Alignment:
| Q |
12 |
cctgaaacgtgaaaagtgttattattgatggaaaataactccatataattcatactatctagcaaggtagctaattaattttcagaccctggtgcctttg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36453355 |
cctgaaacgtgaaaagtgttattattgatggaaaataactccatataattcatactatctagcaaggtagctaattaattttcagaccctggtgcctttg |
36453256 |
T |
|
| Q |
112 |
aacttcttctcagcctccctactgtcaataactgcatcatggaatccataacgtcctctatcatccctcctataataatcatcatcgtaatcacttgcat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36453255 |
aacttcttctcagcctccctactgtcaataactgcatcatggaatccataacgtcctctatcatccctcctataataatcatcatcgtaatcacttgcat |
36453156 |
T |
|
| Q |
212 |
catcaatgaacgtgacacgtgtttgtgaatcacgtggtggtgactgaagctggttaacatttccataaggcctcatggcagcaccggaaccagtcctgtc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36453155 |
catcaatgaacgtgacacgtgtttgtgaatcacgtggtcgtgactgaagctggttaacatttccataaggcctcatggcagcaccggaaccagtcctgtc |
36453056 |
T |
|
| Q |
312 |
agtaaagcgaggagaggcattacctggagttggactatgttgttgatcacgctttgcagcttccatcttcaacaactccatggccttgtcaatgtcatga |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36453055 |
agtaaagcgaggagaggcattacctggagttggactatgttgttgatcacgctttgcagcttccatcttcaacaactccatggccttgtcaatgtcatga |
36452956 |
T |
|
| Q |
412 |
attggctcgcttaattgagtcccttttcttggtgctgcagtccaatatgaattaatttttggcccattgaaattggatctgttgttgtaataattagcag |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36452955 |
attggctcgcttaattgagtcccttttcttggtgctgcagtccaatatgaattaatttttggcccattgaaattggatctgttgttgtaataattagcag |
36452856 |
T |
|
| Q |
512 |
cgttatcaccatcatcatatttaggattgctactacttacaaacggcttatcgttgtggttactaataccatagccgttaccatagttgccgttcctagt |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36452855 |
cgttatcaccatcatcatatttaggattgctactacttacaaacggcttatcgttgtggttactaataccatagccgttaccatagttgccgttcctagt |
36452756 |
T |
|
| Q |
612 |
gggcttgtatccttcttttttgttgtagtcactgccatatccattagggctatcatagccatcttgagtactcctcatgctacctactccaattggt |
708 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36452755 |
gggcttgtatccttcttttttgttgtagtcactgccatatccattagggctatcatagccatcttgagtactccttatgctacctactccaattggt |
36452659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 499 times since January 2019
Visitors: 881