View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: D611-LTR4-TNT-insertion-11 (Length: 867)
Name: D611-LTR4-TNT-insertion-11
Description: D611-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] D611-LTR4-TNT-insertion-11 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 826; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 826; E-Value: 0
Query Start/End: Original strand, 6 - 858
Target Start/End: Complemental strand, 40806827 - 40805975
Alignment:
| Q |
6 |
catcagcgaccttaccggctaatccagggtgataaacaaacgtgacaccaggtcttttcacataagacaacattatagaagtgttgtagtgaacaaaata |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40806827 |
catcagcgaccttaccggctaatccagggtgataaacaaacgtgataccaggtcttttcacataagacaacattatagaagtgttgtagtgaacaaaata |
40806728 |
T |
|
| Q |
106 |
cacattgaaagctttctgatcaataggatatgaaggtatgaaccaatcactaacatttgcattcaaaagctctcctaccccaatatcaatataaaccaac |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40806727 |
cacattgaaagctttctgatcaataggatatgaaggtatgaaccaatcactaacatttgcattcaaaagctctcctaccccaatatcaatataaaccaac |
40806628 |
T |
|
| Q |
206 |
ctcttcntagtagaaacatctacaaacttaggcaaatatgaaaccggcatcggcgtcgtgatagatggtttttcactcacaagaggttccatcagatcta |
305 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40806627 |
ctcttcctagtagaaacatctacaaacttaggcaaatatgaaaccggcatcggcgtcgtgatatatggtttttcactcacaagaggttccatcagatcta |
40806528 |
T |
|
| Q |
306 |
tgagaggtttggttaatgtcaaactaggacaatcagcaggcaaactatactgattatgattgaaaaaagttgttgcattttcggatcttttcttgaaaac |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40806527 |
tgagaggtttggttaatgtcaaactaggacaatcagcaggcaaactatactgattatgattgaaaaaagttgttgcattttcggatcttttcttgaaaac |
40806428 |
T |
|
| Q |
406 |
aacaaggttaaggtcatcaccaacagaatcaacatgaacaacactagaagatctcaacaatgatgaaactggtgtagctgatctaatcaaatcattgtga |
505 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40806427 |
aacaaggttaaggtcatcatcaacagaatcaacatgaacaacactagaagatctcaacaatgatgaaactggtgtagctgatctaatcaaatcattgtga |
40806328 |
T |
|
| Q |
506 |
tgtgaacttttagcacgaacgagaagtgcaccaattccattaggcttaagaacacgttcaacctcaagaacaagcaaagcaggcacagaaaccttatcaa |
605 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
40806327 |
tgtgaacttttagcacgaacgagaagtgcaccaattccattaggcttaagaacacgttcaacctcaagaacaagcaaagcagggacagaaaccttatcaa |
40806228 |
T |
|
| Q |
606 |
ggtccctagacaaaacgaaatcaaatgaagaatcttgataatctagctcataaacgatattcttcatcttgagggagaaaaaacggttggtataaacacc |
705 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40806227 |
ggtccctagacaaaacgaaatcaaatgaagaatcttgataatctagctcataaacgatattcttcatcttgagggagaaaaaacggttggtataaacacc |
40806128 |
T |
|
| Q |
706 |
actaacagttgaaaagcccaaccgtttcattgctttaacagccattgaagaaccttcaccagcacaaagggtatttgcttcacagttcaaaaactgctta |
805 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40806127 |
actaacagttgaaaagcccaactgtttcattgctttaacagccattgaagaaccttcaccaacacaaagggtatttgcttcacagttcaaaaactgctta |
40806028 |
T |
|
| Q |
806 |
cccattaactcagtgaccacattcactgtcaagttaacgtctttttcgcaatt |
858 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40806027 |
cccattaactcagtgaccacattcactgtcaagttaacgtctttttcgcaatt |
40805975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 678 - 858
Target Start/End: Complemental strand, 22552204 - 22552026
Alignment:
| Q |
678 |
gggagaaaaaacggttggtataaacaccactaacagttgaaaagcccaaccgtttcattgctttaacagccattgaagaaccttcaccagcacaaagggt |
777 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| |||||| ||| |
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|
| T |
22552204 |
gggagaagaaacggttggtataaacaccac--acatttgaaaaacccaattgtttcattgctttatcagcccttgaagaaccttcaccaacacaaatggt |
22552107 |
T |
|
| Q |
778 |
atttgcttcacagttcaaaaactgcttacccattaactcagtgaccacattcactgtcaagttaacgtctttttcgcaatt |
858 |
Q |
| |
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|||||||||||| |||||||||| ||||||| || ||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
22552106 |
atttgcttcacaattcaaaaactctttacccaccaattcagtgaccacattcactgtcaagttaccgtctttttcgcaatt |
22552026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 28471351 - 28471451
Alignment:
| Q |
35 |
tgataaacaaacgtgacaccaggtcttttcacataagacaacattatagaagtgttgtagtgaacaaaatacacattgaaagctttctgatcaataggat |
134 |
Q |
| |
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||||||||||| || |||| |||| |||||| | |||||||| |||||||||||||| ||||||||||| ||||||||| |||||| || ||| |||| |
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| T |
28471351 |
tgataaacaaatgtaacacgcggtcctttcacgtgtgacaacataatagaagtgttgtaatgaacaaaataaacattgaaatctttcttatgaattggat |
28471450 |
T |
|
| Q |
135 |
a |
135 |
Q |
| |
|
| |
|
|
| T |
28471451 |
a |
28471451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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