View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: D611-LTR4-TNT-insertion-15 (Length: 514)
Name: D611-LTR4-TNT-insertion-15
Description: D611-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] D611-LTR4-TNT-insertion-15 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 346 - 504
Target Start/End: Original strand, 34900309 - 34900467
Alignment:
| Q |
346 |
tacatttaagtctcttatttattaagtgaactcggatttcaatatgaaaaactagtttaaggaattaggatggctaaacacatcacttagacaatcatta |
445 |
Q |
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| T |
34900309 |
tacatttaagtctcttatttattaagtgaactcggatttcaatatgaaaaactagtttaaggaattagggtggctaaacacatcactcagacaatcacta |
34900408 |
T |
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| Q |
446 |
ttataagcaaaattcattgaataattgatttatggtataagagtagtccatatacatta |
504 |
Q |
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| T |
34900409 |
ttataaacaaaattcattgaataattgatttacggtataagagtagtccatatacatta |
34900467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 34900108 - 34900224
Alignment:
| Q |
145 |
acaatgtgacatattcatttatgacgtgtcgcgcttattatactacactaaaaatccatgttnnnnnnntatatgtttaataagcattgacacaccataa |
244 |
Q |
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| T |
34900108 |
acaatgtgacatattcatttatgacgtgtcgcgcttattagactccactaaaaatccatgttaaataaatatatgtttaataagcattgacacaccataa |
34900207 |
T |
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| Q |
245 |
atgattagacacatcat |
261 |
Q |
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| T |
34900208 |
atgattagacacatcat |
34900224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 34899971 - 34900032
Alignment:
| Q |
8 |
gagatgtacttttggtccttgtactttataaaaataagttttgtttggccctcttcttcaaa |
69 |
Q |
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| T |
34899971 |
gagatgtacttttggtccttgtactttataaaaataagttttgtttggccctcttattcaaa |
34900032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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