View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: D611-LTR4-TNT-insertion-5 (Length: 310)
Name: D611-LTR4-TNT-insertion-5
Description: D611-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] D611-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 41796999 - 41797292
Alignment:
| Q |
8 |
ctttcatctagaagaaaccaccgtccttgtgtccttgaaagtactgattcatgcatcatgcataactaaagcaataatacaaagaaaacaaacccgagag |
107 |
Q |
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| T |
41796999 |
ctttcatctagaagaaaccaccgtccttgtgtccttgaaagtactgattcatgcatcatgcataactaaagcaataatacaaagaaaacaaacccgagag |
41797098 |
T |
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| Q |
108 |
gaatgaagaataatgaaaagctgcgttgtaatgttatgagtccacgtttggttgtatcatgtggcaagggtggctcttataattatagagataaattatt |
207 |
Q |
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| T |
41797099 |
gaatgaagaataatgaaaagctacgttgtaatgttatgagtccacgtttggttgtatcatgtggcaagggtggctcttataattatagagataaattatt |
41797198 |
T |
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| Q |
208 |
gatcgattggtatggtttagaagaagtcattttctgatgtgtaaaactaagcacatgaacgtgtatgttggaatcgcattgatgaagacaattg |
301 |
Q |
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| T |
41797199 |
gatcgattggtatggtttagaagaagtcattttctgatgtgtaaaactaagcacatgaacgtgtatgttggaatcgcattgatgaagacaattg |
41797292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 41762982 - 41763104
Alignment:
| Q |
88 |
aaagaaaacaaacccgagaggaatgaagaataatga--aaagctgcgttgtaatgttatgagtccacgtttggttgtatcatgtggcaagggtggctctt |
185 |
Q |
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||||||| |||| | |||| |||||||||||||||| |||||| | | | |||||||||| ||||||| |||||||||||||||||||||| | | ||| |
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| T |
41762982 |
aaagaaagcaaatcagagatgaatgaagaataatgatcaaagctacatagcaatgttatgaatccacgtgtggttgtatcatgtggcaagggcgtccctt |
41763081 |
T |
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| Q |
186 |
ataattatagagataaattattgat |
210 |
Q |
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| T |
41763082 |
ataatttt--agataaattattgat |
41763104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 41793492 - 41793549
Alignment:
| Q |
219 |
atggtttagaagaagtcattttctgatgtg---taaaactaagcacatgaacgtgtatg |
274 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41793492 |
atggtttaga-gaagtcattttctgatgtagtataaaactaagcacatgaacgtgtatg |
41793549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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