View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: D611-LTR4-TNT-insertion-7 (Length: 100)
Name: D611-LTR4-TNT-insertion-7
Description: D611-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] D611-LTR4-TNT-insertion-7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 2e-46
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 41612041 - 41612134
Alignment:
| Q |
7 |
aataagaagggactcccacaacaagtcctacccaaaggctagccatttcaaacccagaaaaagtcctttggctaggtgtagttggcttaagatc |
100 |
Q |
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| T |
41612041 |
aataagaagggactcccacaacaagtcctacccaaaggctagccatttcaaacccagaaaaagtcctttggctaggtgtagttggcttaagatc |
41612134 |
T |
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