View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: D682-LTR4-TNT-insertion-2 (Length: 134)
Name: D682-LTR4-TNT-insertion-2
Description: D682-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] D682-LTR4-TNT-insertion-2 |
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| [»] scaffold0006 (2 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 75; Significance: 6e-35; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 172245 - 172365
Alignment:
| Q |
7 |
agatccaaggattcatcttatatgcacaataaaatttgcttaattttgaaaagaaccaaaatcccgggaataaggaat------ttcggtctagaagtct |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
172245 |
agatccaaggattcatcttatatgcacaatataatttgcttaattttgaaaagaaccaaaat-ccgggaataaggaatttatccttcggtctagaagtct |
172343 |
T |
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| Q |
101 |
ttttcccttttatcttcattcc |
122 |
Q |
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|||||| ||||| |||||||| |
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| T |
172344 |
ttttcctttttacattcattcc |
172365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 178787 - 178907
Alignment:
| Q |
7 |
agatccaaggattcatcttatatgcacaataaaatttgcttaattttgaaaagaaccaaaatcccgggaataaggaat------ttcggtctagaagtct |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |
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| T |
178787 |
agatccaaggattcatcttatatgcacaatataatttgcttaattttgaaaagaaccaaaat-ccgggaataaggaatttattcttcggtttagaagtct |
178885 |
T |
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| Q |
101 |
ttttcccttttatcttcattcc |
122 |
Q |
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|||||| ||||| |||||||| |
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| T |
178886 |
ttttcctttttacattcattcc |
178907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 6e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 6926686 - 6926566
Alignment:
| Q |
7 |
agatccaaggattcatcttatatgcacaataaaatttgcttaattttgaaaagaaccaaaatcccgggaataaggaat------ttcggtctagaagtct |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
6926686 |
agatccaaggattcatcttatatgcacaatataatttgcttaattttgaaaagaaccaaaat-ccgggaataaggaatttatccttcggtctagaagtct |
6926588 |
T |
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| Q |
101 |
ttttcccttttatcttcattcc |
122 |
Q |
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|||||| ||||| |||||||| |
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| T |
6926587 |
ttttcctttttacattcattcc |
6926566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 6e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 501943 - 501823
Alignment:
| Q |
7 |
agatccaaggattcatcttatatgcacaataaaatttgcttaattttgaaaagaaccaaaatcccgggaataaggaat------ttcggtctagaagtct |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
501943 |
agatccaaggattcatcttatatgcacaatataatttgcttaattttgaaaagaaccaaaat-ccgggaataaggaatttatccttcggtctagaagtct |
501845 |
T |
|
| Q |
101 |
ttttcccttttatcttcattcc |
122 |
Q |
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|||||| ||||| |||||||| |
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| T |
501844 |
ttttcctttttacattcattcc |
501823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 1e-32; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 13593082 - 13593202
Alignment:
| Q |
7 |
agatccaaggattcatcttatatgcacaataaaatttgcttaattttgaaaagaaccaaaatcccgggaataaggaa------tttcggtctagaagtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||| |
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| T |
13593082 |
agatccaaggattcatcttatatgcacaataaaatttgcttaattttgaaaagaaccaaaat-ccgggaataaggaagttattcttcggtatagaagtct |
13593180 |
T |
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| Q |
101 |
ttttcccttttatcttcattcc |
122 |
Q |
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|||||| ||||| |||||||| |
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| T |
13593181 |
ttttcctttttacattcattcc |
13593202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 13674631 - 13674751
Alignment:
| Q |
7 |
agatccaaggattcatcttatatgcacaataaaatttgcttaattttgaaaagaaccaaaatcccgggaataaggaa------tttcggtctagaagtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||| |
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| T |
13674631 |
agatccaaggattcatcttatatgcacaataaaatttgcttaattttgaaaagaaccaaaat-ccgggaataaggaagttattcttcggtatagaagtct |
13674729 |
T |
|
| Q |
101 |
ttttcccttttatcttcattcc |
122 |
Q |
| |
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|||||| ||||| |||||||| |
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| T |
13674730 |
ttttcctttttacattcattcc |
13674751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 20482917 - 20483037
Alignment:
| Q |
7 |
agatccaaggattcatcttatatgcacaataaaatttgcttaattttgaaaagaaccaaaatcccgggaataaggaa------tttcggtctagaagtct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||| |
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| T |
20482917 |
agatccaaggattcatcttatatgcacaataaaatttgcttaattttgaaaagaaccaaaat-ccgggaataaggaagttattcttcggtatagaagtct |
20483015 |
T |
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| Q |
101 |
ttttcccttttatcttcattcc |
122 |
Q |
| |
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|||||| ||||| |||||||| |
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|
| T |
20483016 |
ttttcctttttacattcattcc |
20483037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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