View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: D682-LTR4-TNT-insertion-3 (Length: 51)
Name: D682-LTR4-TNT-insertion-3
Description: D682-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] D682-LTR4-TNT-insertion-3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 34; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 29166103 - 29166070
Alignment:
| Q |
7 |
aggctaggatggataagtgccctataccgtgtgg |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
29166103 |
aggctaggatggataagtgccctataccgtgtgg |
29166070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2257 times since January 2019
Visitors: 847