View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: D682-LTR4-TNT-insertion-4 (Length: 263)
Name: D682-LTR4-TNT-insertion-4
Description: D682-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] D682-LTR4-TNT-insertion-4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 123 - 255
Target Start/End: Original strand, 28466883 - 28467015
Alignment:
| Q |
123 |
catataacttagaaatgaaatgggttgtatttattaacaatgaaaagtttattgtatggtacatgcacaacaacaattagaacctatgttttgctttcct |
222 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28466883 |
catataacttagaaatgaaattggttgtatttattaacaatgaaaagtttattgtatggtacatgcacaacaacaattagaacctatgttttgctttcct |
28466982 |
T |
|
| Q |
223 |
ctgtacacttaaaaaataaggttcctattgatc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
28466983 |
ctgtacacttaaaaaataaggttcctattgatc |
28467015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 28466768 - 28466818
Alignment:
| Q |
8 |
cctatctatatggttctaattagtattagtttcttttcatgggactttagc |
58 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28466768 |
cctatctatatggatctaattagtattagtttcttttcatgggattttagc |
28466818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 28488676 - 28488732
Alignment:
| Q |
145 |
ggttgtatttattaacaatgaaaagtttattgtatggtacatgcacaacaacaatta |
201 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||| |||||| |||||||| |
|
|
| T |
28488676 |
ggttgtatttatcaacaatgagaagtttattgtatggtaacagcacaagaacaatta |
28488732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2250 times since January 2019
Visitors: 847