View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: D682-LTR4-TNT-insertion-5 (Length: 214)
Name: D682-LTR4-TNT-insertion-5
Description: D682-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] D682-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 28488124 - 28488323
Alignment:
| Q |
7 |
acttctcatcattcacttttatttagttggtctcctccacaactatatcctcgacataaatctacatttttaagcgtagtggccaaactatcgtcgcatc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
28488124 |
acttctcatcattcacttttatttagttggtctcctccacaactatatcctcgacataaatctacatttttaagcgtagtggccaaactattgtcacatc |
28488223 |
T |
|
| Q |
107 |
caaattattctcgaccataaccttgttctcaaccttgcttatctcagttatttggctttcttctttttcctttagttgtatcttgagtttattagtgatc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28488224 |
caaattattctcgaccataaccttgttctcaaccttgcttatctcagttatttggctttcttctttttcctttagttgtatcttgagtttattagtgatc |
28488323 |
T |
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