View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: D682-LTR4-TNT-insertion-8 (Length: 346)
Name: D682-LTR4-TNT-insertion-8
Description: D682-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] D682-LTR4-TNT-insertion-8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 338
Target Start/End: Original strand, 33999107 - 33999429
Alignment:
| Q |
7 |
atccaagtcagtcaaaatctagagacttaaactaatcttgcgtgtaccaaaattcatttaagnnnnnnnnngattaacatatcttataaaaatgtgcaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
33999107 |
atccaagtcagtcaaaatctagagacttaaactaatcttgcgtgtaccaaaattcatttaagaaaaaaaaaaattaacatctc--ataaaaatgtgcaat |
33999204 |
T |
|
| Q |
107 |
ttcatttcataccctnnnnnnnnngatgtgtgcattgataaaccgtgacacagacacgatgttgtgttccacgttgaaaataaaaaacatcatgcaacta |
206 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33999205 |
ttcatttcataccctaaaaaaattaatgtgtgcatt-------cgtgacacagacacgatgttgtgttccacgttgaaaataaaaaacatcatgcaacta |
33999297 |
T |
|
| Q |
207 |
gttgtttgttgcncaagcatgatgtcacaaactacaacaaaattgccatcccttgaaagcgtgactggtccctttccctattcggacnattttgacacta |
306 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33999298 |
gttgtttgttgcaaaagcatgatgtcacaaactacaacaaaattgccatcccttgaaagcgtgactggtccctttccctattcggacaattttgacacta |
33999397 |
T |
|
| Q |
307 |
tatagggnccctaatacaccctaactatgatc |
338 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| |
|
|
| T |
33999398 |
tatagggtccctaagacaccctaactatgatc |
33999429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2307 times since January 2019
Visitors: 849