View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9045J-LTR4-TNT-insertion-2 (Length: 265)
Name: F9045J-LTR4-TNT-insertion-2
Description: F9045J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9045J-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 35630091 - 35630339
Alignment:
| Q |
7 |
accaattacagcacgtgaatctccaagatttgcaacatgtagcgtccctttccatatgattccagcaagacagcatgaaccaacttttccaagatttcga |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35630091 |
accaattacagcacgtgaatctccaagatttgcaacatgtagcgtccctttccatatgattccagcaagacagcatgaaccaacttttccaagatttcga |
35630190 |
T |
|
| Q |
107 |
tttatcatataattcctttttacagaatccaaaaaactcgcttcagtagcagaaacagcatccctcagggtagcttcagttattttattctcattctcat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35630191 |
tttatcatataattcctttttacagaatccaaaaaactcgcttcagtagcagaaacagcatccctcagggtagcttcagttattttattctcattctcat |
35630290 |
T |
|
| Q |
207 |
tagtaagccctataatgtaaccacataacataaaagcaaaattccatta |
255 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35630291 |
tagtaagccctataatgtaaccacataacataaaagcaaaattccatta |
35630339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 35636542 - 35636790
Alignment:
| Q |
7 |
accaattacagcacgtgaatctccaagatttgcaacatgtagcgtccctttccatatgattccagcaagacagcatgaaccaacttttccaagatttcga |
106 |
Q |
| |
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||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35636542 |
accaattacagcacgcgaatctccaagattcgcaacatgtagcgtctttttccatataattccagcaagacagcatgaaccaacttttccaagattattt |
35636641 |
T |
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| Q |
107 |
tttatcatataattcctttttacagaatccaaaaaactcgcttcagtagcagaaacagcatccctcagggtagcttcagttattttattctcattctcat |
206 |
Q |
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| T |
35636642 |
ttttgcctataatttttttctacatattccaaaaaacctgcttcagtagcagaaacagcatccctcagggtaggttcagttattttattctcattcgctc |
35636741 |
T |
|
| Q |
207 |
tagtaagccctataatgtaaccacataacataaaagcaaaattccatta |
255 |
Q |
| |
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| T |
35636742 |
gcacagcccctaaaatgtaaccacataacataaaataaaaattccatta |
35636790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 10298760 - 10298519
Alignment:
| Q |
7 |
accaattacagcacgtgaatctccaagatttgcaacatgtagcgtccctttccatatgattccagcaagacagcatgaaccaacttttccaagatttcga |
106 |
Q |
| |
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|||||||||| | || |||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| | |||||||||| | |
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| T |
10298760 |
accaattacaacgcgcgaatctccaagatttgcaacatgtagtgtctctttccatataattccagcaagacagcatgaaccaacatatccaagatttggc |
10298661 |
T |
|
| Q |
107 |
tttatcatataattcctttttacagaatccaaaaaactcgcttcagtagcagaaacagcatccctcagggtagcttcagttattttattctcattctcat |
206 |
Q |
| |
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| |||||||||| ||||| || |||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| | ||||||||| |||| |
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| T |
10298660 |
tgatgcatataattcatttttgcaaaatccaaaaaaccctcttcagtagcagaaacagcatttctcagggtagcttcagttatatcattctcattatcat |
10298561 |
T |
|
| Q |
207 |
tagtaagccctataatgtaaccacataacataaaagcaaaat |
248 |
Q |
| |
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||| || ||||||||||||| ||||||||||||||| ||||| |
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| T |
10298560 |
tagcaaaccctataatgtaaacacataacataaaagaaaaat |
10298519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 10319192 - 10318951
Alignment:
| Q |
7 |
accaattacagcacgtgaatctccaagatttgcaacatgtagcgtccctttccatatgattccagcaagacagcatgaaccaacttttccaagatttcga |
106 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| | |||||||||| | |
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| T |
10319192 |
accaattacaacccgcgaatctccaagatttgcaacatgtagtgtctctttccatataattccagcaagacagcatgaaccaacatatccaagatttggc |
10319093 |
T |
|
| Q |
107 |
tttatcatataattcctttttacagaatccaaaaaactcgcttcagtagcagaaacagcatccctcagggtagcttcagttattttattctcattctcat |
206 |
Q |
| |
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| |||||||||| ||||| || |||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| | ||||||||| |||| |
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| T |
10319092 |
tgatgcatataattcatttttgcaaaatccaaaaaaccctcttcagtagcagaaacagcatttctcagggtagcttcagttatatcattctcattatcat |
10318993 |
T |
|
| Q |
207 |
tagtaagccctataatgtaaccacataacataaaagcaaaat |
248 |
Q |
| |
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||| || ||||||||||||| ||||||||||||||| ||||| |
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| T |
10318992 |
tagcaaaccctataatgtaaacacataacataaaagaaaaat |
10318951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 10336307 - 10336073
Alignment:
| Q |
7 |
accaattacagcacgtgaatctccaagatttgcaacatgtagcgtccctttccatatgattccagcaagacagcatgaaccaacttttccaagatttcga |
106 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| | |||||||||| | |
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| T |
10336307 |
accaattacaacccgcgaatctccaagatttgcaacatgtagtgtctctttccatataattccagcaagacagcatgaaccaacatatccaagatttggc |
10336208 |
T |
|
| Q |
107 |
tttatcatataattcctttttacagaatccaaaaaactcgcttcagtagcagaaacagcatccctcagggtagcttcagttattttattctcattctcat |
206 |
Q |
| |
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| |||||||||| ||||| || |||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| | ||||||||| |||| |
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| T |
10336207 |
tgatgcatataattcatttttgcaaaatccaaaaaaccctcttcagtagcagaaacagcatttctcagggtagcttcagttatatcattctcattatcat |
10336108 |
T |
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| Q |
207 |
tagtaagccctataatgtaaccacataacataaaa |
241 |
Q |
| |
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||| || ||||||||||||| |||||||||||||| |
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| T |
10336107 |
tagcaaaccctataatgtaaacacataacataaaa |
10336073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 10338153 - 10337922
Alignment:
| Q |
10 |
aattacagcacgtgaatctccaagatttgcaacatgtagcgtccctttccatatgattccagcaagacagcatgaaccaacttttccaag-----atttc |
104 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| | || |
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| T |
10338153 |
aattacagcacgcgaatctccaagattcgcaatatgtagcgtccctttccatataattccagcaagacagcatgaaccaa-atatccaagaatataattg |
10338055 |
T |
|
| Q |
105 |
gatttatcatataattcctttttacagaatccaaaaaactcgcttcagtagcagaaacagcatccctcagggtagcttcagttattttattctcattctc |
204 |
Q |
| |
|
| | | ||||||||| |||||||| |||||||| ||| | ||||||||||| |||| |||| ||||||||||||||||||||| | ||||| ||| || |
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|
| T |
10338054 |
gctctgcaatataattcgtttttacaaaatccaaacaaccctcttcagtagcaaaaactgcattcctcagggtagcttcagttatatcattctaattatc |
10337955 |
T |
|
| Q |
205 |
attagtaagccctataatgtaaccacataacat |
237 |
Q |
| |
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|||| | ||||||||||| ||||||||||||| |
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|
| T |
10337954 |
tttagcatgccctataatggaaccacataacat |
10337922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 10300584 - 10300521
Alignment:
| Q |
174 |
gggtagcttcagttattttattctcattctcattagtaagccctataatgtaaccacataacat |
237 |
Q |
| |
|
|||||||||||||||| | ||||| ||| || |||| | ||||||||||| ||||||||||||| |
|
|
| T |
10300584 |
gggtagcttcagttatatcattctaattatctttagcatgccctataatggaaccacataacat |
10300521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 10318873 - 10318829
Alignment:
| Q |
197 |
tcattctcattagtaagccctataatgtaaccacataacataaaa |
241 |
Q |
| |
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||||| ||||||| || ||||||||||||| |||||||||||||| |
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| T |
10318873 |
tcattatcattagcaaaccctataatgtaaacacataacataaaa |
10318829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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