View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9045J-LTR4-TNT-insertion-3 (Length: 205)
Name: F9045J-LTR4-TNT-insertion-3
Description: F9045J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9045J-LTR4-TNT-insertion-3 |
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| [»] scaffold0108 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 195
Target Start/End: Complemental strand, 12416278 - 12416093
Alignment:
| Q |
10 |
tcatataattaaaatgtagttcgagaaatattagcttacctgtagttgcagctaatgcatcaaaattgtcaatatagtacattttgcttctatttgattc |
109 |
Q |
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| T |
12416278 |
tcatataattaaaatgtagttcgagaaatattagcttacctgtagttgcagctaatgcatcaaaattgtcaatatagtacattttgcttctatttgattc |
12416179 |
T |
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| Q |
110 |
atgtctagcaaagatagacatataataattgactccgataaagtctaaacttcctttgagcatatgtttctcctttttagtgaatt |
195 |
Q |
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| T |
12416178 |
atgtctagcaaagatagacatataataattgactccgataaagtctaaacttcctttgagcatatgtttctcctttttagtgaatt |
12416093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 18122360 - 18122458
Alignment:
| Q |
97 |
ttctatttgattcatgtctagcaaagatagacatataataattgactccgataaagtctaaacttcctttgagcatatgtttctcctttttagtgaatt |
195 |
Q |
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| T |
18122360 |
ttctatttggttcatgtctaacaaagagagaaaaataataattgatcccaataaagtctgtacttcctttcaacatttctttctcatttttagtgaatt |
18122458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 18060550 - 18060648
Alignment:
| Q |
97 |
ttctatttgattcatgtctagcaaagatagacatataataattgactccgataaagtctaaacttcctttgagcatatgtttctcctttttagtgaatt |
195 |
Q |
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| T |
18060550 |
ttctatttggttcatgtctaacaaagtgagaagtataataattaattccaataaagtctatgcttcctttcaacatttctttctcatttttagtgaatt |
18060648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 18090603 - 18090701
Alignment:
| Q |
97 |
ttctatttgattcatgtctagcaaagatagacatataataattgactccgataaagtctaaacttcctttgagcatatgtttctcctttttagtgaatt |
195 |
Q |
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| T |
18090603 |
ttctatttggttcatgtctaacatagtgagaactataataattgattccaataaagtctatgcttcctttcaacatttctttctcgtttttagtgaatt |
18090701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 193
Target Start/End: Complemental strand, 17192 - 17032
Alignment:
| Q |
33 |
agaaatattagcttacctgtagttgcagctaatgcatcaaaattgtcaatatagtacattttgcttctatttgattcatgtctagcaaagatagacatat |
132 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||||||||| | | |||| ||||||||||||||||||||||| ||||| | ||| || |
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| T |
17192 |
agaaatattagcttaccattagttgcagctaaggcatcaaaattgtcaagagggaacatattgcttctatttgattcatgtctggcaaaaacagaataat |
17093 |
T |
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| Q |
133 |
aataattgactccgataaagtctaaacttcctttgagcatatgtttctcctttttagtgaa |
193 |
Q |
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| T |
17092 |
aataattgactcccacaaagtctaaacttcctttgatcatattttcctcctttttagtgaa |
17032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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