View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9049J-LTR4-TNT-insertion-10 (Length: 428)
Name: F9049J-LTR4-TNT-insertion-10
Description: F9049J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9049J-LTR4-TNT-insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 7 - 418
Target Start/End: Complemental strand, 6217490 - 6217079
Alignment:
| Q |
7 |
aggtacaagcttaggaaactagtgaagatgatttccccaatctccaattatggtgaatgaatttgatttggccacataagagcaattaatgtagaaattt |
106 |
Q |
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| T |
6217490 |
aggtacaagcttaggaaactagtgaagatgatttccccaatctccaattatggtgaatgaatttgatttggccacataagagcaattaatgtagaaattt |
6217391 |
T |
|
| Q |
107 |
atatgagtaatcattgttgaaacacaaagtaaagggaaaactagtactacatcaaattcttattggatcaccaaattattaattgtaaatgaaaaagttg |
206 |
Q |
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| T |
6217390 |
atatgagtaatcattgttgaaacacaaagtaaagggaaaactagtactacatcaaattcttattggatcaccaaattattaattgtaaatgaaaaagttg |
6217291 |
T |
|
| Q |
207 |
caaatgaagaatataaattcatattatagatgattcatatgtttggcttgcaaacacatctaaccgtccataatgttctaacccctctttaggttcatcc |
306 |
Q |
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| T |
6217290 |
caaatgaagaatataaattcatattatagatgattcatatgtttggcttgcaaacacatctaaccgtccataatgttctaacccctctttaggttcatcc |
6217191 |
T |
|
| Q |
307 |
atataactagattgactataatgccatgtacctgcaacaaccattaaggtaatgactactatataccataatcaaaatatgaagatgtagaagatccaat |
406 |
Q |
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| T |
6217190 |
atataactagattgactataatgccatgtacctgcaacaaccattaaggtaatgactactatataccataatcaaaatatgaagatgtagaagatccaat |
6217091 |
T |
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| Q |
407 |
gtaactagaatt |
418 |
Q |
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|||||||||||| |
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| T |
6217090 |
gtaactagaatt |
6217079 |
T |
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