View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9049J-LTR4-TNT-insertion-12 (Length: 631)
Name: F9049J-LTR4-TNT-insertion-12
Description: F9049J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9049J-LTR4-TNT-insertion-12 |
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Alignment Details
Target: chr3 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 9 - 621
Target Start/End: Complemental strand, 30593331 - 30592719
Alignment:
| Q |
9 |
taaggaaaagagcccctacactccacacagaaactgagagacataaggcacgtactacgtacagttagtgcctaactcactagtagtagcagtaccacac |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30593331 |
taaggaaaagagcccctacactccacacagaaactgagagacataaggcacgtactacgtacagttagtgcctaactcactagtagtagcagtaccacac |
30593232 |
T |
|
| Q |
109 |
actacccatattccaagctttcatttcactctctctcgattggattgatttgatttattttgaaaccaacaacacgactacctaaaaactcttcacgaca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30593231 |
actacccatattccaagctttcatttcactctctctcgattggattgatttgatttattttgaaaccaacaacacgactacctaaaaactcttcacgaca |
30593132 |
T |
|
| Q |
209 |
taattcacagaccctcccattgacccattcttcttacaaacacgcaaatcacctgctacagttcagatacaaatttatacagtacatcatataacgtgga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30593131 |
taattcacagaccctcccattgacccattcttcttacaaacacgtaaatcacctgctacagttcagatacaaatttatacagtacatcatataacgtgga |
30593032 |
T |
|
| Q |
309 |
tataaactcgcttggattaacctaacggtgtttgtttaaaacttttgagtgtgttcgtttaaaagtcttgtgtttgattcttttcgtatcagtttttgtg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30593031 |
tataaactcgcttggattaacctaacggtgtttgtttaaaacttttgagtgtgttcgtttaaaagtcttgtgtttgattcttttcgtatcagtttttgtg |
30592932 |
T |
|
| Q |
409 |
gattagtttgattttttcataaaaataaggataaatagacgtattccgattatctatatactatagatactttccaaccactaaatgttatatatttata |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30592931 |
gattagtttgattttttcataaaaataaggataaatagacgtattccgattatctatatactatagatactttccaaccactaaatgttatatatttata |
30592832 |
T |
|
| Q |
509 |
tagaaaatatcaacttacaatgatattacattacgttaatgttacattattccatgattttttacttgttatataaaatgcataaagttttcaccatcat |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30592831 |
tagaaaatatcaacttacaatgatattacattacgttaatgttacattattccatgattttttacttgttatataaaatgcataaagttttcaccatcat |
30592732 |
T |
|
| Q |
609 |
ttaacgatgatta |
621 |
Q |
| |
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||||||||||||| |
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| T |
30592731 |
ttaacgatgatta |
30592719 |
T |
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