View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9049J-LTR4-TNT-insertion-7 (Length: 284)
Name: F9049J-LTR4-TNT-insertion-7
Description: F9049J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9049J-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 52036655 - 52036920
Alignment:
| Q |
10 |
tatagctagagctgttgttgcttctatacattcatcaaaagatgataacaacaatggtattagtcaacttcaaaggtttcagtatcaagttactgaattg |
109 |
Q |
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| T |
52036655 |
tatagctagagctgttgttgcttctatacattcatcaaaagatgataacaacaatggtattagtcaacttcaaaggtttcagtatcaagttactgaattg |
52036754 |
T |
|
| Q |
110 |
ttcaagggattttcaagtgttcaaaatgaaaatactaattacaatcctgaaatcctcactactctcaagcgtcaatgggctgcaaattttcacttgaagt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52036755 |
ttcaagggattttcaagtgttcaaaatgaaaatactaattacaatcctgaaatcctcactactctcaagcgtcaatgggctgcaaattttcacttgaagt |
52036854 |
T |
|
| Q |
210 |
acatggtatcatgcttaataagctgtttgcttcttgttacttttaggatctttcctttgctaattg |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52036855 |
acatggtatcatgcttaataagctgtttgcttcttgttacttttaggatctttcctttgccaattg |
52036920 |
T |
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