View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9072J-LTR4-TNT-insertion-2 (Length: 439)
Name: F9072J-LTR4-TNT-insertion-2
Description: F9072J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9072J-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 8 - 430
Target Start/End: Complemental strand, 35619055 - 35618633
Alignment:
| Q |
8 |
cggggttcgaaccccgaacatcccatttattcaacctattctcttcatcatcatttcaattttgaggcatatggggatcaaccacctttagaagaaatta |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35619055 |
cggggttcgaaccccgaacatcccatttattcaacctattctcttcatcatcatttcaattttgaggcatatggggatcaaccacctttagaagaaatta |
35618956 |
T |
|
| Q |
108 |
tcgaatgaggctcatcaatcttagcagatttaattgccttttactgtccagaaattggagattaatttcctttaaaataaatgaccgggtgtgggtctta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35618955 |
tcgaatgaggctcatcaatcttagcagatttaattgccttttactgtccagaaattggagattaatttcctttaaaataaatgaccgggtgtgggtctta |
35618856 |
T |
|
| Q |
208 |
gcgggtaatttgccttttaataccttactcatcagctcaaaaactttttaattttaggttggctcatatttcagaggtattcaatttaacaaaggacaac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35618855 |
gcgggtaatttgccttttaataccttactcatcagctcaaaaactttttaattttaggttggctcatatttcagaggtattcaatttaacaaaggacaac |
35618756 |
T |
|
| Q |
308 |
catatttcctttatttaaagtatctatttcttctatacaagcttcacaagaagataaccaagttcaataatattataagacaagagtatggggatcatga |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35618755 |
catatttcctttatttaaagtatctatttcttctatacaagcttcacaagaagataaccaagttcaataatattataagacaagagtatggggatcatga |
35618656 |
T |
|
| Q |
408 |
atttaagagatttataacaattg |
430 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
35618655 |
atttaagagatttataacaattg |
35618633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 52833153 - 52833121
Alignment:
| Q |
8 |
cggggttcgaaccccgaacatcccatttattca |
40 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
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|
| T |
52833153 |
cggggttcgaaccccggacatcccatttattca |
52833121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 424
Target Start/End: Original strand, 5729922 - 5730032
Alignment:
| Q |
317 |
tttatttaaagtatctatttcttctatacaagcttcacaagaagataaccaagttc-aataatattataagac-aagagtatg-gggatcatgaatttaa |
413 |
Q |
| |
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|||||||||||||||||||| ||| || ||||||||||| ||||||| ||||||| |||||| ||||||||| |||||| || || ||||||||||||| |
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|
| T |
5729922 |
tttatttaaagtatctattttttccatggaagcttcacaaaaagataatcaagttcaaataattttataagacaaagagtgtgtggaatcatgaatttaa |
5730021 |
T |
|
| Q |
414 |
gagatttataa |
424 |
Q |
| |
|
|||||||||| |
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|
| T |
5730022 |
aagatttataa |
5730032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 424
Target Start/End: Original strand, 5800468 - 5800550
Alignment:
| Q |
345 |
caagcttcacaagaagataaccaagttc-aataatattataagac-aagagtatg-gggatcatgaatttaagagatttataa |
424 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |||||| ||||||||| |||||| || || ||||||||||||| |||||||||| |
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|
| T |
5800468 |
caagcttcacaaaaagataatcaagttcaaataattttataagacaaagagtgtgtggaatcatgaatttaaaagatttataa |
5800550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 25139934 - 25139902
Alignment:
| Q |
8 |
cggggttcgaaccccgaacatcccatttattca |
40 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
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|
| T |
25139934 |
cggggttcgaaccccgaacatcccacttattca |
25139902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 30542812 - 30542844
Alignment:
| Q |
8 |
cggggttcgaaccccgaacatcccatttattca |
40 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
30542812 |
cggggttcgaaccccgaacattccatttattca |
30542844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 35195891 - 35195923
Alignment:
| Q |
8 |
cggggttcgaaccccgaacatcccatttattca |
40 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
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|
| T |
35195891 |
cggggttcgaaccccgaacaccccatttattca |
35195923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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