View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9091J-LTR4-TNT-insertion-4 (Length: 152)
Name: F9091J-LTR4-TNT-insertion-4
Description: F9091J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9091J-LTR4-TNT-insertion-4
Alignment Details
Target: chr8 (Bit Score: 135; Significance: 1e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 5461561 - 5461423
Alignment:
Q
4
aacacgttcaaccaccgcgcacaccgaaaacagacagccgagagttcaaggaactcatgaagctggacctagtagaattagacatgttacacttggttag
103
Q
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
5461561
aacaagttcaaccaccgcgcacaccgaaaacagacagccgagagttcaaggaactcatgaagctggacctagtagaattagacatgttacacttggttag
5461462
T
Q
104
caatgtcagccattactgattattcacataacatcatta
142
Q
|||||||||||||||||||||||||||||||||||||||
T
5461461
caatgtcagccattactgattattcacataacatcatta
5461423
T
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