View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9091J-LTR4-TNT-insertion-5 (Length: 317)
Name: F9091J-LTR4-TNT-insertion-5
Description: F9091J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9091J-LTR4-TNT-insertion-5 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 27136791 - 27136632
Alignment:
| Q |
10 |
gtggttaatagcttcaattaaaattcaaacattaaggagaacttgaatttatatcttgtcggaaacaaatcattggtcagcttttacttaaccccaatta |
109 |
Q |
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| T |
27136791 |
gtggttaatagcttcaattaaaattcaaacattaaggagaacttgaatttatatcttgtcggaaacaaatcattggtcagcttttacttaaccccaatta |
27136692 |
T |
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| Q |
110 |
atatgtgaaaatcaatgataaacttttatttaactcccaactaaacaatgaattacaatt |
169 |
Q |
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| T |
27136691 |
atatgtgaaaatcaatgataaacttttatttaactcccaactaaacaatgaattacaatt |
27136632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 166 - 307
Target Start/End: Original strand, 17971135 - 17971276
Alignment:
| Q |
166 |
aattcttattcccaaaaaagaaatgacaaattttataagattgaatnnnnnnnttgattaatcattttatagtaaaggagttgctatgcttagtgtgtga |
265 |
Q |
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| T |
17971135 |
aattcttattcccaaaaaagaaatgacaaattttataagattgaataaaaaaattgattaatcattttatagtaaaggagttgctatgcttagtgtgtga |
17971234 |
T |
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| Q |
266 |
ctcgttggnnnnnnnnagagtggttaaatttctacaagaatt |
307 |
Q |
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| T |
17971235 |
ctcgttggttttttttagagtggttaaatttctacaagaatt |
17971276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 166 - 307
Target Start/End: Complemental strand, 18344730 - 18344590
Alignment:
| Q |
166 |
aattcttattcccaaaaaagaaatgacaaattttataagattgaatnnnnnnnttgattaatcattttatagtaaaggagttgctatgcttagtgtgtga |
265 |
Q |
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| T |
18344730 |
aattcttattcccaaaaaagaaatgacaaattttataagattgaataaaaaa-ttgattaatcattttatagtaaaggagttgctatgcttagtgtgtga |
18344632 |
T |
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| Q |
266 |
ctcgttggnnnnnnnnagagtggttaaatttctacaagaatt |
307 |
Q |
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| T |
18344631 |
ctcgttggttttttttagagtggttaaatttctacaagaatt |
18344590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 166 - 307
Target Start/End: Original strand, 162602 - 162743
Alignment:
| Q |
166 |
aattcttattcccaaaaaagaaatgacaaattttataagattgaatnnnnnnnttgattaatcattttatagtaaaggagttgctatgcttagtgtgtga |
265 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
162602 |
aattcttattttcaaaaaagaaatgacaaattttataagattgaataaaaaaattgattaatcattttatagtaaaggagttgctatgcttagtgtgtga |
162701 |
T |
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| Q |
266 |
ctcgttggnnnnnnnnagagtggttaaatttctacaagaatt |
307 |
Q |
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| T |
162702 |
ctcgttagttttttttagagtggttaaatttctacaagaatt |
162743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 27532899 - 27532932
Alignment:
| Q |
171 |
ttattcccaaaaaagaaatgacaaattttataag |
204 |
Q |
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| T |
27532899 |
ttattcccaaaaaagaaatgacaaattttataag |
27532932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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