View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9091J-LTR4-TNT-insertion-7 (Length: 621)
Name: F9091J-LTR4-TNT-insertion-7
Description: F9091J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9091J-LTR4-TNT-insertion-7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 372
Target Start/End: Complemental strand, 8567013 - 8566648
Alignment:
| Q |
8 |
atataaactctagacttctacatctactgatataaaaataggagagggagggaagggtagagaagaatagtagcaaaaagaacaacagttgttcatctaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8567013 |
atataaactctagacttctacatctactgatataaaaataggagagggaaggaagggtagagaagaatagtagcaaaaagaacaacagttgttcatctaa |
8566914 |
T |
|
| Q |
108 |
aacaccacatcgatnnnnnnnnnnnn-cagagactccaccgcttaaattgtggatcctccttgtttagccgcacaccgccaccgtcaaagaatccaacga |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8566913 |
aacaccacatcgataaaaaaaaaaaaacagagactccaccgcttaaattgtggatcctccttgtttagccgcacaccgccaccgtcaaagaatccaacga |
8566814 |
T |
|
| Q |
207 |
cctccatgtccattgtctttccttttccttcgttctccagtttgctttctctacatcttgggttttatttcttaccttttctctttgacaaaattacaca |
306 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8566813 |
cctccatgtccattgtctttctttttccttcgttctccagtttgctttctctacatcttgggttttatttcttaccttttctctttgacaaaattacaca |
8566714 |
T |
|
| Q |
307 |
atttgtattttaatttagttgcaataaccctgtataaaatgtcaacaacaatatccttctttataa |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8566713 |
atttgtattttaatttagttgcaataaccctgtataaaatgtcaacaacaatatccttctttataa |
8566648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 404 - 465
Target Start/End: Complemental strand, 8566616 - 8566555
Alignment:
| Q |
404 |
catcaaactcataaacacactcaactattcatcttgcaaacataggaactcatgttttattg |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8566616 |
catcaaactcataaacacactcaactattcatcttgcaaacataggaactcatgttttattg |
8566555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 37 - 309
Target Start/End: Original strand, 8557219 - 8557491
Alignment:
| Q |
37 |
atataaaaataggagagggagggaagggtagagaagaatagtagcaaaaagaacaacagttgttcatctaaaacaccacatcgatnnnnnnnnnnnncag |
136 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| |||||||||||||| ||| || ||| ||| |||||||||||| || | |
|
|
| T |
8557219 |
atataaaaataggagaggcaaggaagggtagagaagaagagtagcaaaaagaatcacacttattcctctcaaacaccacatcaataaaaaaaa-----aa |
8557313 |
T |
|
| Q |
137 |
agactccaccgcttaaattgtggatcctccttgtttagccgcacaccgccaccgtcaaagaatccaacgacctccatgtccattgtctttccttttcctt |
236 |
Q |
| |
|
| |||| ||| |||||| || ||||||||||||||||||| |||| |||| ||||||| ||||| ||| || || ||||| |||||||| |||||||| |
|
|
| T |
8557314 |
aaactctaccacttaaactgccaatcctccttgtttagccgcgcaccaccacagtcaaag-atccagcgatcttcacgtccactgtctttctttttcctt |
8557412 |
T |
|
| Q |
237 |
cg--ttctccagtttgctttctc----tacatcttgggttttatttcttaccttttctctttgacaaaattacacaatt |
309 |
Q |
| |
|
| |||| |||||||||||| ||||| ||| |||||||||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
8557413 |
tgttttcttacgtttgctttctctacgtacattttgagttttatttcttacctcttccttttggcaaaattacacaatt |
8557491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 527 - 577
Target Start/End: Complemental strand, 8566493 - 8566443
Alignment:
| Q |
527 |
catatattttcattacgagcattaaagttagttagcacacttttgataccc |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8566493 |
catatattttcattacgagcattaaagttagttagcacacttttgataccc |
8566443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 37 - 309
Target Start/End: Complemental strand, 8594388 - 8594124
Alignment:
| Q |
37 |
atataaaaataggagagggagggaagggtagagaagaatagtagcaaaaagaacaacagttgttcatctaaaacaccacatcgatnnnnnnnnnnnncag |
136 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||||| |||| ||||| ||| |||| |||||| ||| |||||||||||| || | |
|
|
| T |
8594388 |
atataaaaataggagaggcaaggatgggtagagaagaagagtaacaaaatgaataacacttgttcctctcaaacaccacatcaatgaaa---------aa |
8594298 |
T |
|
| Q |
137 |
agactccaccgcttaaattgtggatcctccttgtttagccgcacaccgccaccgtcaaagaatccaacgacctccatgtccattgtctttccttttcctt |
236 |
Q |
| |
|
| |||| || |||||| || ||||||||||||||||||| |||| |||| ||||||| ||||| || || || ||||| |||||||| |||||||| |
|
|
| T |
8594297 |
aaactctacgacttaaactgccaatcctccttgtttagccgcgcaccaccacagtcaaag-atccagagatcttcacgtccactgtctttctttttcctt |
8594199 |
T |
|
| Q |
237 |
cg--ttctccagtttgctttctctacatcttgggttttatttcttaccttttctctttgacaaaattacacaatt |
309 |
Q |
| |
|
|| |||| | ||||||||||||||| ||| || ||||||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
8594198 |
cgttttcttacgattgctttctctacattttgagtcttatttcttacctcttccttttggcaaaattacacaatt |
8594124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 8612036 - 8612115
Alignment:
| Q |
37 |
atataaaaat-aggagagggagggaagggtagagaagaatagtagcaaaaagaacaacagttgttcatctaaaacaccac |
115 |
Q |
| |
|
|||||||||| |||||||| | |||||||||||||||||||||||||||||||| |||| |||||| | | ||||||||| |
|
|
| T |
8612036 |
atataaaaattaggagaggcaaggaagggtagagaagaatagtagcaaaaagaataacacttgttcctttcaaacaccac |
8612115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 8646614 - 8646532
Alignment:
| Q |
37 |
atataaaaat-aggagagggagggaagggtagagaagaatagtagcaaaaagaacaacagttgttcatctaaaacaccacatc |
118 |
Q |
| |
|
|||||||||| |||||| | | |||||||||||||||||||||||||||||||| |||| |||||| | | |||||||||||| |
|
|
| T |
8646614 |
atataaaaattaggagaagcaaggaagggtagagaagaatagtagcaaaaagaataacacttgttcctttcaaacaccacatc |
8646532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 246 - 276
Target Start/End: Complemental strand, 8646427 - 8646397
Alignment:
| Q |
246 |
gtttgctttctctacatcttgggttttattt |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8646427 |
gtttgctttctctacatcttgggttttattt |
8646397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 290 - 322
Target Start/End: Complemental strand, 4030926 - 4030894
Alignment:
| Q |
290 |
tttgacaaaattacacaatttgtattttaattt |
322 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
4030926 |
tttgacaaaattacacaatttgtcttttaattt |
4030894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 37998 times since January 2019
Visitors: 2940