View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9096J-LTR4-TNT-insertion-3 (Length: 162)
Name: F9096J-LTR4-TNT-insertion-3
Description: F9096J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9096J-LTR4-TNT-insertion-3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 143; Significance: 2e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 31831867 - 31831725
Alignment:
| Q |
10 |
tagtgctctttatatattgatttccttctggatcaaataatgatagaaaattgttaattatctctcaggggcaactgggaaattccaaatatcggtctta |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31831867 |
tagtgctctttatatattgatttccttctggatcaaataatgatagaaaattgttaattatctctcaggggcaactgggaaattccaaatatcggtctta |
31831768 |
T |
|
| Q |
110 |
ataatcatcgattcatagcactgtttcctactaatcatgaatt |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31831767 |
ataatcatcgattcatagcactgtttcctactaatcatgaatt |
31831725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2264 times since January 2019
Visitors: 848