View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9096J-LTR4-TNT-insertion-5 (Length: 572)
Name: F9096J-LTR4-TNT-insertion-5
Description: F9096J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9096J-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 549; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 10 - 562
Target Start/End: Complemental strand, 32255403 - 32254851
Alignment:
| Q |
10 |
cgtagcaccgcaacatccacgacgggaacaccatataacccagccaattccaatataaaaaaggccatacttgtggccactgacattgatgctcttgact |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32255403 |
cgtagcaccgcaacatccacgacgggaacaccatataacccagccaattccaatataaaaaaggccatacttgtggccactgacattgatgctcttgact |
32255304 |
T |
|
| Q |
110 |
aatgggagtctaaagtcccactctagcatcttgtagggaaacgacgaagtaggtgcgtgaagatccatggtaacaggatacttagccatgtccacataaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32255303 |
aatgggagtctaaagtcccactctagcatcttgtagggaaacgacgaagtaggtgcgtgaagatccatggtaacaggatacttagccatgtccacataaa |
32255204 |
T |
|
| Q |
210 |
ttttgcttattgattctaagtctattgcattcctcctccatgggaatcatgttcaactttgcaaatattagagtgcatggacatcagaagaaaaagatga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32255203 |
ttttgcttattgattctaagtctattgcattcctcctccatgggaatcatgttcaactttgcaaatattagagtgcatggacatcagaagaaaaagttga |
32255104 |
T |
|
| Q |
310 |
catcctaattaagttgacacccaaaattcactacctatcatttgcaacaccctaacaaatttattgacataaagaaatacaataaaaatcttggaaggga |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32255103 |
catcctaattaagttgacacccaaaattcactacctatcatttgcaacaccctaacaaatttattgacataaagaaatacaataaaaatcttggaaggga |
32255004 |
T |
|
| Q |
410 |
tagaccaaaacccaagaagtaggataaccgctcatgaagaaaaagagtgcaattcaataactagcaacaagaccaaactcaaaataaaacaactaaccat |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32255003 |
tagaccaaaacccaagaagtaggataaccgctcatgaagaaaaagagtgcaattcaataactagcaacaagaccaaactcaaaataaaacaactaaccat |
32254904 |
T |
|
| Q |
510 |
catctaaatctataactttctaaagaagttttctttgatacaccttgatatta |
562 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32254903 |
catctaaatctataactttctaaagaagttttctttgatacaccttgatatta |
32254851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 26 - 470
Target Start/End: Complemental strand, 32249123 - 32248674
Alignment:
| Q |
26 |
ccacgacgggaacaccatataacccagccaattccaatataaaaaaggccatacttgtggccactgacattgatgctcttgactaatgggagtctaaagt |
125 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| |||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||| || | |
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| T |
32249123 |
ccacgacgggaacaccatataatccagccaattccactataaacaaggtcattcttgtggccactgacattgatgctcttgactaatgagagtctgaaat |
32249024 |
T |
|
| Q |
126 |
cccactctagcatcttgtagggaaacgacgaagtaggtgcgtgaagatccatggtaacaggatacttagccatgtccacataaattttgcttattgattc |
225 |
Q |
| |
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||| | ||||||||||||||| |||||| || || ||| |||||||| || |||| || || | ||||||||||||||||| || ||||||| |
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| T |
32249023 |
ccctttgtagcatcttgtaggggaacgacaaaatacatgcatgaagatcaatagtaatagcat-------cttgtccacataaattttgtttgttgattc |
32248931 |
T |
|
| Q |
226 |
t-----aagtctattgcattcctc--ctccatgggaatcatgttcaactttgcaaatattagagtgcatggacatcagaagaaaaagatga------cat |
312 |
Q |
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| |||||||||||||||||| ||| |||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| || |
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| T |
32248930 |
tatgacaagtctattgcattcctcctctcgatggaaatcatgttcaactttgcaaaatttagagtgcatggacattagaagaaaaacttgatatcttaat |
32248831 |
T |
|
| Q |
313 |
cctaattaagttgacacccaaaattcactacctatcatttgcaacaccctaacaaatttattg--acataaagaaatacaataaaaatcttggaagggat |
410 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||| |||||||||| ||||||||||||||| | |||| |||||||||||| ||||||| | | | |
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| T |
32248830 |
cctaattaa-ttaacacccaaaattcacta-ctataatttgcaacaaactaacaaatttattgatagataattaaatacaataaacatcttggga-gact |
32248734 |
T |
|
| Q |
411 |
agaccaaaacccaagaagtaggataaccgctcatgaagaaaaagagtgcaattcaataac |
470 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||| || |||||||||||||||||| |
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| T |
32248733 |
agaccaaaacccaagaagtaggataaatcctcacgaaggaatagagtgcaattcaataac |
32248674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 30 - 213
Target Start/End: Complemental strand, 32264396 - 32264213
Alignment:
| Q |
30 |
gacgggaacaccatataacccagccaattccaatataaaaaaggccatacttgtggccactgacattgatgctcttgactaatgggagtctaaagtccca |
129 |
Q |
| |
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||||| |||||||||||| ||||| ||||||| |||||| |||| ||| |||||||||| |||||||||||||||||||||||||| ||| ||| |||| |
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| T |
32264396 |
gacggaaacaccatataatccagctaattccagtataaacaaggacattcttgtggccattgacattgatgctcttgactaatgggcgtccaaaatccct |
32264297 |
T |
|
| Q |
130 |
ctctagcatcttgtagggaaacgacgaagtaggtgcgtgaagatccatggtaacaggatacttagccatgtccacataaatttt |
213 |
Q |
| |
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| |||||||||||||||||||||||||||| ||||||||||||| || |||| |||||||| |||| |||||||||||||||| |
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| T |
32264296 |
ttgtagcatcttgtagggaaacgacgaagtacgtgcgtgaagatcaatagtaataggatactcagccttgtccacataaatttt |
32264213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 420
Target Start/End: Complemental strand, 32236595 - 32236485
Alignment:
| Q |
311 |
atcctaattaagttgacacccaaaattcactacctatcatttgcaacaccctaacaaatttattg--acataaagaaatacaataaaaatcttggaaggg |
408 |
Q |
| |
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|||||||||| || |||||||||||||||||| ||| |||||||||| ||||||||||||||| | | ||||| |||||||||| ||||||| || |
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| T |
32236595 |
atcctaattagattaacacccaaaattcactac-tataatttgcaacaaactaacaaatttattgatagagaaagatatacaataaacatcttgggggga |
32236497 |
T |
|
| Q |
409 |
atagaccaaaac |
420 |
Q |
| |
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||||||||||| |
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|
| T |
32236496 |
ctagaccaaaac |
32236485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 226 - 391
Target Start/End: Complemental strand, 23203119 - 23202952
Alignment:
| Q |
226 |
taagtctattgcattcctcctccatgggaatcatgttcaactttgcaaatattagagtgcatggacatcagaagaaaaagatgacatcctaattaagttg |
325 |
Q |
| |
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||||| |||||||||| |||||||||| | ||||||||||||||||||| |||||||||||||| ||| ||| || | ||||||||||| || |||| |
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| T |
23203119 |
taagtatattgcattcatcctccatggaagtcatgttcaactttgcaaaaattagagtgcatgggcattagatgatgagcttgacatcctaactaggttg |
23203020 |
T |
|
| Q |
326 |
acacccaaaattcactacctatcatttgcaacaccctaacaaatttattg--acataaagaaatacaa |
391 |
Q |
| |
|
| | || ||||||| |||||||||||||||||| |||||||||||||||| | |||||||||||||| |
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|
| T |
23203019 |
agatcctaaattcattacctatcatttgcaacatcctaacaaatttattgataaataaagaaatacaa |
23202952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 481 - 563
Target Start/End: Complemental strand, 23194092 - 23194011
Alignment:
| Q |
481 |
accaaactcaaaataaaacaactaaccatcatctaaatctataactttctaaagaagttttctttgatacaccttgatattag |
563 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||| |
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|
| T |
23194092 |
accaaactcaaaataaagcaactaaccatcatctaaatctgtaactttctaaagaagtctt-gttgatacaccttgacattag |
23194011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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