View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9100J-LTR4-TNT-insertion-2 (Length: 147)
Name: F9100J-LTR4-TNT-insertion-2
Description: F9100J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9100J-LTR4-TNT-insertion-2
Alignment Details
Target: chr1 (Bit Score: 130; Significance: 1e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 26455119 - 26455248
Alignment:
Q
9
ggctttgagaaatcacactgatttgaaagttggaacgtattggggagagaaaggtgttgacaactgggatggagctatatggaaagaacaaatggagaaa
108
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
26455119
ggctttgagaaatcacactgatttgaaagttggaacgtattggggagagaaaggtgttgacaactgggatggagctatatggaaagaacaaatggagaaa
26455218
T
Q
109
catgaggtgagagtctttgcatttcaattg
138
Q
||||||||||||||||||||||||||||||
T
26455219
catgaggtgagagtctttgcatttcaattg
26455248
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 26446939 - 26447064
Alignment:
Q
12
tttgagaaatcacactgatttgaaagttggaacgtattggggagagaaaggtgtt-gacaactgggatggagctatatggaaagaacaaatggagaaaca
110
Q
||||||||||||||||||||||||||||||||||||||||||||| | | |||| ||| |||||||||||||||||||||| || ||||||||||||
T
26446939
tttgagaaatcacactgatttgaaagttggaacgtattggggagacatggttgttagacttctgggatggagctatatggaaaaaaaaaatggagaaacg
26447038
T
Q
111
tgaggtgagagtctttgcatttcaat
136
Q
||||||||||||||||||||||||||
T
26447039
tgaggtgagagtctttgcatttcaat
26447064
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 26447618 - 26447489
Alignment:
Q
9
ggctttgagaaatcacactgatttgaaagttggaacgtattggggagagaaaggtgttgacaactgggatggagctatatggaaagaacaaatggagaaa
108
Q
||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||| || |||||||||||||||||||||| |||||||||||
T
26447618
ggctttgagaaatcacactgatttgaaagttggaaggtattggagagtcatgggtgttgacttctaggatggagctatatggaaagaagaaatggagaaa
26447519
T
Q
109
c--atgaggtgagagtctttgcatttcaat
136
Q
| |||||||||||||||||||||||||||
T
26447518
catatgaggtgagagtctttgcatttcaat
26447489
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 8e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 8e-50
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 29674014 - 29674141
Alignment:
Q
9
ggctttgagaaatcacactgatttgaaagttggaacgtattggggagagaaaggtgttgacaactgggatggagctatatggaaagaacaaatggagaaa
108
Q
||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||
T
29674014
ggctttgagaaatcacactgatttgaaagttggaatgtattggggagacatgggtgttgacttctgggatggagctatatggaaagaacaaatggagaaa
29674113
T
Q
109
catgaggtgagagtctttgcatttcaat
136
Q
|||||||||||||||||| |||||||||
T
29674114
catgaggtgagagtctttacatttcaat
29674141
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 6e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 11495368 - 11495259
Alignment:
Q
10
gctttgagaaatcacactgatttgaaagttggaacgtattggggagagaaaggtgttgacaactgggatggagctatatggaaagaacaaatggagaaac
109
Q
||||||||||||||||||||||||||| |||||| |||||||||||| | ||||||||| |||||||||||| | ||||||||| | ||||||||||||
T
11495368
gctttgagaaatcacactgatttgaaaattggaatgtattggggagatatgggtgttgactactgggatggagatgtatggaaaggagaaatggagaaac
11495269
T
Q
110
atgaggtgag
119
Q
||||||||||
T
11495268
atgaggtgag
11495259
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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