View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9100J-LTR4-TNT-insertion-3 (Length: 414)
Name: F9100J-LTR4-TNT-insertion-3
Description: F9100J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9100J-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 10 - 404
Target Start/End: Original strand, 31424914 - 31425308
Alignment:
| Q |
10 |
catgaacaaaggagaggaggaatatggactaaaagggtcttaaagttgatagaattggtatatcatatattctctatatggattttagatttggggtcac |
109 |
Q |
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| T |
31424914 |
catgaacaaaggagaggaggaatatggactaaaagggtcttaaagttgatagaattggtatatcatatattctctatatggattttagatttggggtcac |
31425013 |
T |
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| Q |
110 |
actcacatgttaggagggtagtagttggagaggagaccaaagtaatttattttgggcaaattcatggacccatatcactagtactagtgggctcactaag |
209 |
Q |
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| T |
31425014 |
actcacatgttaggagggtagtagttggagaggagaccaaagtaatttattttgggcaaattcatggacccatatcactagtactagtgggctcactaag |
31425113 |
T |
|
| Q |
210 |
tgaaagtggaagttgttaggtggtcaggtagactaattaccccaccaaattagccaaaatagaagcaaaaccatcaccatttgttcgtaactttgtatga |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31425114 |
tgaaagtggaagttgttaggtggtcaggtagactaattaccccaccaaattagccaaaatagaagcaaaaccatcaccatttgtttgtaactttgtatga |
31425213 |
T |
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| Q |
310 |
ttttatatggaaaattgatgttcacacatgttataaggtagaaataaaccattaaatgatcatgatattcctcagcagttaactgtcgatgaatt |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31425214 |
ttttatatggaaaattgatgttcacacatgttataaggtagaaataaaccattaaatgatcatgatattcctcagcagttaactgtcgatgaatt |
31425308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 348
Target Start/End: Original strand, 34230427 - 34230457
Alignment:
| Q |
318 |
ggaaaattgatgttcacacatgttataaggt |
348 |
Q |
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| T |
34230427 |
ggaaaattgatgttcacacatgttataaggt |
34230457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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