View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9101J-LTR4-TNT-insertion-4 (Length: 594)
Name: F9101J-LTR4-TNT-insertion-4
Description: F9101J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9101J-LTR4-TNT-insertion-4 |
 | |
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| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0125 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 81 - 529
Target Start/End: Complemental strand, 18055311 - 18054862
Alignment:
| Q |
81 |
attaatggaattccttgtcggctttctgtaaaatactcgtttggacggggacttccaaatacatcgtaagctaaacccgtgctgacaaataaccaacccg |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18055311 |
attaatggaattccttgtcggctttctgtaaaatactcgtttggacggggacttccaaatacatcgtaagctaaacccgtgctgacaaataaccaacccg |
18055212 |
T |
|
| Q |
181 |
caatgaatagggagggtatagtaatgctatgaataatccagtatcgaatactggtaataatatcagcaaaagaacgttctcctgtgcttccagacatgcc |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18055211 |
caatgaatagggagggtatagtaatgctatgaataatccagtatcgaatactggtaataatatcagcaaaagaacgttctcctgtgcttccagacatgcc |
18055112 |
T |
|
| Q |
281 |
gagctccacatattcttatacagtc-aagggggatcgattccataaaagatgagattagtaaatagaaatttactgaaatgcaatctttgttagatcgtc |
379 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18055111 |
gagctccacatattcttatacagtcaaagggggatcgattccataaaagatgagattagtaaatagaaatttactgaaatgcaatctttgttagatcgtc |
18055012 |
T |
|
| Q |
380 |
aattttgtaccaagggtctctttcgagtataccgaatcagtatagctatccttcttctaacacagcaacgaaatttcacaatcagtggcgcgatcaagta |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18055011 |
aattttgtaccaagggtctctttcgagtataccgaatcagtatagctatccttcttctaacacagcaacgaaatttcacaatcagtggcgagatcaagta |
18054912 |
T |
|
| Q |
480 |
ctataaaattaaatttatttctttatttcattttcaagaattgaattaat |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18054911 |
ctataaaattaaatttatttctttatttcattttcaagaattgaattaat |
18054862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 42028042 - 42028119
Alignment:
| Q |
9 |
gaccatcattcatgatcatataagatatgcaggcagatacttacttacattgatgggcatgaaaaggagtaaattaat |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42028042 |
gaccatcattcatgatcatataagatatgcaggcagatacttacttacattgatgggcatgaaaaggagtaaattaat |
42028119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 81 - 467
Target Start/End: Original strand, 22771354 - 22771741
Alignment:
| Q |
81 |
attaatggaattccttgtcggctttctgtaaaatactcgtttggacggggacttccaaatacatcgtaagctaaacccgtgctgacaaataaccaacccg |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
22771354 |
attaatggaattccttgtcggctttctgtaaaatactcgtttggacggggacttccaaatacatagtaagctaaacccgtgctgacaaataaccaacccg |
22771453 |
T |
|
| Q |
181 |
caatgaatagggagggtatagtaatgctatgaataatccagtatcgaatactggtaataatatcagcaaaagaacgttctcctgtgcttccagacatgcc |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22771454 |
caatgaatagggagggtatagtaatgctatgaataatccagtatcgaatactggtaataatatcagcaaaagaacgttctcctgtgcttccagacatgcc |
22771553 |
T |
|
| Q |
281 |
gagctccacatattcttatacagtc-aagggggatcgattccataaaagatgagattagtaaatagaaatttactgaaatgcaatctttgttagatcgtc |
379 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22771554 |
gagctccacatattcttatacagtcaaagggggatcgattccataaaagatgagattagtaaatagaaatttactgaaatgcaatctttgttagatcgtc |
22771653 |
T |
|
| Q |
380 |
aattttgtaccaagggtctctttcgagtataccgaatcagtatagctatccttcttctaacacagcaacgaaatttcacaatcagtgg |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
22771654 |
aattttgtaccaagggtctctttcgagtataccgaattagtatagctatccttcttctaacacagcaacgaaatttcacaattagtgg |
22771741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 33992866 - 33992810
Alignment:
| Q |
168 |
aataaccaacccgcaatgaatagggagggtatagtaatgctatgaataatccagtat |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33992866 |
aataaccaacccgcaatgaatagggagggtatagtaatgctatgaataatccagtat |
33992810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 163; Significance: 9e-87; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 81 - 433
Target Start/End: Original strand, 262386 - 262744
Alignment:
| Q |
81 |
attaatggaattccttgtcggctttctgtaaaatactcgtttggacggggacttccaaatacatcgtaagctaaacccgtgctgacaaataaccaacccg |
180 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||| |||||||| | ||||||||||| || || |||||||||||||| ||||||||||||||||||| |
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|
| T |
262386 |
attaacggaattccttgtcggctttccgtgaaatattcgtttggcctaggacttccaaacacgtcataagctaaacccgtactgacaaataaccaacccg |
262485 |
T |
|
| Q |
181 |
caatgaatagggagggtatagtaatgctatgaataatccagtatcgaatactggtaataatatcagcaaaagaacgttctcctgtgcttccagacatgcc |
280 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
262486 |
caatgaatagggaaggtatagtaatgctatgaataacccagtatcgaatactggtaataatatcagcaaaagaacgttctcccgtgcttccagacatgct |
262585 |
T |
|
| Q |
281 |
gagctccacatattcttatacagtc--aagggggatcgattccataaaagatgagat----tagtaaatagaaatttactgaaatgcaatctttgttaga |
374 |
Q |
| |
|
|| |||| | ||| || |||| || || || || |||||| ||||||||| ||| |||||||||||| ||||||| || ||| |||| ||| |
|
|
| T |
262586 |
gaactcccaaaatttttgtacattcaaaaaaggaattgattccgtaaaagatgggatcaaccagtaaatagaaaattactgatatttcatccttgtgaga |
262685 |
T |
|
| Q |
375 |
tcgtcaattttgtaccaagggtctctttcgagtataccgaatcagtatagctatccttc |
433 |
Q |
| |
|
| |||||||||||||||| ||| | ||| ||||||||||||| |||||||||||||||| |
|
|
| T |
262686 |
ttgtcaattttgtaccaaaggtgtattttgagtataccgaattagtatagctatccttc |
262744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 254 - 391
Target Start/End: Complemental strand, 18451834 - 18451696
Alignment:
| Q |
254 |
acgttctcctgtgcttccagacatgccgagctccacatattcttatacagtcaa-gggggatcgattccataaaagatgagattagtaaatagaaattta |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18451834 |
acgttctcctgtgcttccagacatgccgagctccacatattcttatacagtcaaagggggatcgattccataaaagatgagattagtaaatagaaattta |
18451735 |
T |
|
| Q |
353 |
ctgaaatgcaatctttgttagatcgtcaattttgtacca |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18451734 |
ctgaaatgcaatctttgttagatcgtcaattttgtacca |
18451696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 451 - 529
Target Start/End: Complemental strand, 14484409 - 14484331
Alignment:
| Q |
451 |
aatttcacaatcagtggcgcgatcaagtactataaaattaaatttatttctttatttcattttcaagaattgaattaat |
529 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14484409 |
aatttcacaatcagtggcgagatcaagtactataaaattaaatttatttctttatttcattttcaagaattgaattaat |
14484331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 44578969 - 44578894
Alignment:
| Q |
120 |
tttggacggggacttccaaatacatcgtaagctaaacccgtgctgacaaataaccaacccgcaatgaatagggagg |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44578969 |
tttggacggggacttccaaatacatcgtaagctaaacccatgctaacaaataaccaacccgcaatgaatagggagg |
44578894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 523 - 584
Target Start/End: Complemental strand, 41699044 - 41698983
Alignment:
| Q |
523 |
aattaatcaaaattagtctctaatatttttatacgagatataaattacaagtctatctatta |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41699044 |
aattaatcaaaattagtctctaatatttttatacgagatataaattacaagtctatctatta |
41698983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 6e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 1973193 - 1973070
Alignment:
| Q |
84 |
aatggaattccttgtcggctttctgtaaaatactcgtttggacggggacttccaaatacatcgtaagctaaacccgtgctgacaaataaccaacccgcaa |
183 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1973193 |
aatggaattcattgtcggctttctgtaaaatactcgtttggacggggactttcaaatacatcgtaagctaaacccgtgctgacaaataaccaacctgcaa |
1973094 |
T |
|
| Q |
184 |
tgaatagggagggtatagtaatgc |
207 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
1973093 |
tgaatagggagggtattgtaatgc |
1973070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Original strand, 19236122 - 19236158
Alignment:
| Q |
493 |
tttatttctttatttcattttcaagaattgaattaat |
529 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||| |
|
|
| T |
19236122 |
tttatttctttatttcatttttaataattgaattaat |
19236158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 430 - 529
Target Start/End: Complemental strand, 11146 - 11047
Alignment:
| Q |
430 |
cttcttctaacacagcaacgaaatttcacaatcagtggcgcgatcaagtactataaaattaaatttatttctttatttcattttcaagaattgaattaat |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11146 |
cttcttctaacacagcaacgaaatttcacaatcagtggcgagatcaagtactataaaattaattttatttctttatttcattttcaagaattgaattaat |
11047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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