View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9101J-LTR4-TNT-insertion-7 (Length: 265)
Name: F9101J-LTR4-TNT-insertion-7
Description: F9101J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9101J-LTR4-TNT-insertion-7 |
 | |
|
| [»] scaffold0695 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 14125875 - 14125626
Alignment:
| Q |
10 |
aacaagaaaatagagaaaatgcctcacgtactagcaagcaacaaatccctaaacatgggcaacttattagaaaagcaactaaaacagaaacataaaaata |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14125875 |
aacaagaaaatagagaaaatgcctcacgtactagcaagcaacaaatccctaaacatgggcaacttattagaaaagcaactaaaacagaaacataaaaata |
14125776 |
T |
|
| Q |
110 |
gcaaactgatgaatgcttcttgcagctagtacttttaaagttcaatgtggtcatagctaccattgtcttcatctggatgatccttatgagtatgaagatc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14125775 |
gcaaactgatgaatgcttcttgcagctagtacttttaaagttcaatgtggtcatagctaccattgtcttcatctggatgatccttatgagtatgaagatc |
14125676 |
T |
|
| Q |
210 |
aagcctaccattgttgcgtggcagtatcttcttcaacgaaggccaattgg |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14125675 |
aagcctaccattgttgcgtggcagtatcttcttcaacgaaggccaattgg |
14125626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 14115545 - 14115305
Alignment:
| Q |
10 |
aacaagaaaatagagaaaatgcctcacgtactagcaagcaacaaatccctaaacatgggcaacttattagaaaagcaactaaaacagaaacataaaaata |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14115545 |
aacaagaaaatagagaaaatgcctcacgtactagcaagcaacaaatccctaaacatgggcaacttaatagaaaagcaactaaaacagaaacataaaaata |
14115446 |
T |
|
| Q |
110 |
gcaaactgatgaatgcttcttgcagctagtacttttaaagttcaatgtggtcatagctaccattgtcttcatctggatgatccttatgagtatgaagatc |
209 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| | || |||| ||||||||||| |||||||||||||| | |||| || |
|
|
| T |
14115445 |
gcaaactgatgaatgctccttgcagctagtacttttaaagttcaacgggg---------ccatagtcttcatctgtatgatccttatgagaacgaaggtc |
14115355 |
T |
|
| Q |
210 |
aagcctaccattgttgcgtggcagtatcttcttcaacgaaggccaattgg |
259 |
Q |
| |
|
|||||||||||||| |||||||||||| | ||||||| |||||||||| |
|
|
| T |
14115354 |
aagcctaccattgtcgcgtggcagtatgctgctcaacgagggccaattgg |
14115305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0695 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0695
Description:
Target: scaffold0695; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 4753 - 5002
Alignment:
| Q |
10 |
aacaagaaaatagagaaaatgcctcacgtactagcaagcaacaaatccctaaacatgggcaacttattagaaaagcaactaaaacagaaacataaaaata |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4753 |
aacaagaaaatagagaaaatgcctcacgtactagcaagcaacaaatccctaaacatgggcaacttattagaaaagcaactaaaacagaaacataaaaata |
4852 |
T |
|
| Q |
110 |
gcaaactgatgaatgcttcttgcagctagtacttttaaagttcaatgtggtcatagctaccattgtcttcatctggatgatccttatgagtatgaagatc |
209 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4853 |
gcaaactgatgaatgctccttgcagctagtacttttaaagttcaatgtggtcatagctaccattgtcttcatctggatgatccttatgagtatgaagatc |
4952 |
T |
|
| Q |
210 |
aagcctaccattgttgcgtggcagtatcttcttcaacgaaggccaattgg |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4953 |
aagcctaccattgttgcgtggcagtatcttcttcaacgaaggccaattgg |
5002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 37703 times since January 2019
Visitors: 2909