View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9101J-LTR4-TNT-insertion-9 (Length: 715)
Name: F9101J-LTR4-TNT-insertion-9
Description: F9101J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9101J-LTR4-TNT-insertion-9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 688; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 10 - 705
Target Start/End: Complemental strand, 26217788 - 26217093
Alignment:
| Q |
10 |
gtacatatttagactccgtgaatttctcctttctaatcagggctgataaaccttcatcataaagaaacccataagaaagggtccccttgttgaagacctc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26217788 |
gtacatatttagactccgtgaatttctcctttctaatcagggctgataaaccttcatcataaagaaacccataagaaagggtccccttgttgaagacctc |
26217689 |
T |
|
| Q |
110 |
ttgcaagtatgacagggtccactacacttctattaacaatgacggagtaatccataattcaaacacacaacataatcgaaatccaacctatcataggatt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26217688 |
ttgcaagtatgacagggtccactacacttctattaacaatgacggagtaatccataattcaaacacacaacataatcgaaatccaacctatcataggatt |
26217589 |
T |
|
| Q |
210 |
tactaatataaagtctatgagctacattaccttgattaactttcaccttaggtttcacacgatgaacaatttcaatggttgtcattgcattatcgagaat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26217588 |
tactaatataaagtctatgagctacattaccttgattaactttcaccttaggtttcacacgatgaacaatttcaatggttgtcattgcattatcgagaat |
26217489 |
T |
|
| Q |
310 |
agagtaacttgacacaaaagccgattgatttttgtatatacacttatcaagtacactttcaacatgttggctaatactttaaccacaactttatagagca |
409 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26217488 |
agagtaacttgacacaaaagctgattgatttttgtatatacacttatcaagtacactttcaacatgttggctaatactttaaccacaactttatagagca |
26217389 |
T |
|
| Q |
410 |
cattacataaagctatagatgaataaacctctcccatagggattagatcaatgtttgttgagtttgtaattaggctaggaggaaagataacagagacctt |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26217388 |
cattacataaagctatagatgaataaacctctcctatagggattagatcaatgtttgttgagtttgtaattaggctaggaggaaagataacagagacctt |
26217289 |
T |
|
| Q |
510 |
caaagtgcaacccgcagtaaatatatgatgaccacaatttttctaattttttgttaaataaaaatcagggttatagccataacgtcctcgtcattatcaa |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26217288 |
caaagtgcaacccgcagtaaatatatgatgaccacaatttttctaattttttgttaaataaaaatcagggttatagccataacgtcctcgtcattatcaa |
26217189 |
T |
|
| Q |
610 |
ctttcatagagaagatggtttccttgaattcttcaaataggaaagcggcaaatagaaactcattatccatactagtgaatagtgttagatggatta |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26217188 |
ctttcatagagaagatggtttccttgaattcttcaaataggaaagcggcaaatagaaactcattatccatactagtgaatagtgttagatggatta |
26217093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 38654 times since January 2019
Visitors: 2999