View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9105J-LTR4-TNT-insertion-1 (Length: 294)
Name: F9105J-LTR4-TNT-insertion-1
Description: F9105J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9105J-LTR4-TNT-insertion-1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 49234701 - 49234977
Alignment:
| Q |
8 |
gaaggaatgaccgtattagatgctcattcttaactgccagaatatgtatagtttatgagttactcaaacttttatgggtgaatatatatctttttactta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49234701 |
gaaggaatgaccgtattagatgctcattcttaactgccagaatatgtatagtttatgagttactcaaacttttatgggtgaatatatatctttttactta |
49234800 |
T |
|
| Q |
108 |
gtatcaatgtgtagttagtttgagtgagagtaaacaattgtgtgctgttcatttatttaatatcaaactagatagatatctatgaaagatggacagccca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49234801 |
gtatcaatgtgtagttagtttgagtgagagtaaacaattgtgtgctgttcatttatttaatatcaaactagatagatatctatgaaagatggacagccca |
49234900 |
T |
|
| Q |
208 |
actgatttaaactaagggattaggagttgatggttctgcatttaaatccgaagaaagaaaaaagaaactaattatta |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49234901 |
actgatttaaactaagggattaggagttgatggttctgcatttaaatccgaagaaagaaaaaagaaactaattatta |
49234977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 553 times since January 2019
Visitors: 889