View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9119J-LTR4-TNT-insertion-10 (Length: 483)
Name: F9119J-LTR4-TNT-insertion-10
Description: F9119J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9119J-LTR4-TNT-insertion-10 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 7 - 473
Target Start/End: Original strand, 12119693 - 12120159
Alignment:
| Q |
7 |
agttaatgctttccttactaccttagcatctcgacttggaggatcatgcagccaaagtaacaatgctttctgaaaccaaacataaagacgtcatatagtt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12119693 |
agttaatgctttccttactaccttagcatctcgacttggaggatcatgcagccaaagtaacaatgctttctgaaaccaaacataaagacgtcatatagtt |
12119792 |
T |
|
| Q |
107 |
aacctagtttgacgcggttagacgaagatataaggactcactaataaccacatgatcagagggagatcttatcataggtccaacgattttcaaacaatcg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12119793 |
aacctagtttgacgcggttagacgaagatataaggactcactaataaccacatgatcagagggagatcttatcataggtccaacgattttcaaacaatcg |
12119892 |
T |
|
| Q |
207 |
gtcatattcaatgtttaaatgttgtgtgtttaattcaaaattagtaaatgcttaacttgcttgtagcgcaagtaactgataggatagagttcagttttct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12119893 |
gtcatattcaatgtttaaatgttgtgtgtttaattcaaaattagtaaatgcttaacttgcttgtagcgcaagtaactgataggatagagttcagttttct |
12119992 |
T |
|
| Q |
307 |
gttatggcagttagtttgttatttcggttatgtgcttgagcaaaaatagctcattgaagtggaatgataatttagtttctgaaatttaacgaaattctaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12119993 |
gttatggcagttagtttgttatttcggttatgtgcttgagcaaaaatagctcattgaagtggaatgataatttagtttctgaaatttaacgaaattctaa |
12120092 |
T |
|
| Q |
407 |
aatggctcctaaaactgaaaatctttattcatattaaacttttctaattatttctagggctaaatta |
473 |
Q |
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| T |
12120093 |
aatggctcctaaaactgaaaatctttattcatattaaacttttctaattatttctagggctaaatta |
12120159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 15038851 - 15038803
Alignment:
| Q |
237 |
taattcaaaattagtaaatgcttaacttgcttgtagcgcaagtaactga |
285 |
Q |
| |
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|||||||||| |||| |||| ||| ||||||||| |||||||||||||| |
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| T |
15038851 |
taattcaaaaatagtcaatggttaccttgcttgtggcgcaagtaactga |
15038803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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