View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9119J-LTR4-TNT-insertion-11 (Length: 297)

Name: F9119J-LTR4-TNT-insertion-11
Description: F9119J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9119J-LTR4-TNT-insertion-11
F9119J-LTR4-TNT-insertion-11
[»] chr3 (3 HSPs)
chr3 (8-171)||(31698975-31699138)
chr3 (53-107)||(3460750-3460804)
chr3 (11-84)||(46743175-46743248)
[»] chr2 (6 HSPs)
chr2 (10-171)||(9910357-9910518)
chr2 (11-130)||(14951100-14951219)
chr2 (21-130)||(38531622-38531730)
chr2 (11-130)||(6186534-6186653)
chr2 (55-118)||(33544181-33544244)
chr2 (21-97)||(27888567-27888643)
[»] chr8 (6 HSPs)
chr8 (10-171)||(3763198-3763359)
chr8 (21-130)||(5515072-5515181)
chr8 (12-68)||(39580356-39580412)
chr8 (136-171)||(5515176-5515211)
chr8 (13-98)||(10181847-10181932)
chr8 (11-98)||(15050314-15050399)
[»] chr5 (8 HSPs)
chr5 (21-130)||(42269053-42269162)
chr5 (8-130)||(40600132-40600254)
chr5 (11-130)||(12156021-12156140)
chr5 (55-131)||(34574450-34574526)
chr5 (21-122)||(11470623-11470724)
chr5 (58-130)||(30248416-30248488)
chr5 (131-171)||(42269023-42269063)
chr5 (55-120)||(42221195-42221260)
[»] chr7 (5 HSPs)
chr7 (21-130)||(24717798-24717907)
chr7 (10-130)||(43047940-43048060)
chr7 (11-98)||(32979001-32979088)
chr7 (36-122)||(26711933-26712019)
chr7 (55-99)||(36582668-36582712)
[»] chr6 (7 HSPs)
chr6 (21-130)||(10772646-10772754)
chr6 (11-130)||(30845164-30845283)
chr6 (21-130)||(24842939-24843047)
chr6 (11-130)||(24350450-24350569)
chr6 (55-98)||(9566660-9566703)
chr6 (11-98)||(10670293-10670380)
chr6 (73-130)||(32747886-32747943)
[»] scaffold0974 (1 HSPs)
scaffold0974 (10-130)||(2655-2775)
[»] chr1 (5 HSPs)
chr1 (10-171)||(2077639-2077790)
chr1 (11-130)||(10494579-10494698)
chr1 (11-130)||(14351454-14351573)
chr1 (11-120)||(11814389-11814500)
chr1 (21-97)||(26842245-26842321)
[»] chr4 (3 HSPs)
chr4 (12-131)||(52635427-52635545)
chr4 (49-131)||(55728445-55728526)
chr4 (12-98)||(42677875-42677961)
[»] scaffold0027 (1 HSPs)
scaffold0027 (55-130)||(2675-2750)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 31698975 - 31699138
Alignment:
Q  8 taagcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31698975 taagcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttct 31699074  T
Q  108 cttctgcagttgagcgcagttaaagcgtagttaagcacaggtaaaatcaccacctaagtatttg 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31699075 cttctgcagttgagcgcagttaaagcgtagttaagcacaggtaaaatcaccacctaagtatttg 31699138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 3460804 - 3460750
Alignment:
Q  53 catccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttct 107  Q
    |||||||||||||||| || ||||||||||| ||||| ||||||||| |||||||    
T  3460804 catccaaaataaccatcaaacctaccaaaaatccgtgcaaccgcactttgcttct 3460750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 46743248 - 46743175
Alignment:
Q  11 gcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaac 84  Q
    |||||| || |||||| ||||||| |||||  ||  |||||| ||||||||||||||| || ||||||||||||    
T  46743248 gcaatagcagaaacaaatcttgtgccaaaccattaaaaaacctatccaaaataaccatcaaacctaccaaaaac 46743175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 9910357 - 9910518
Alignment:
Q  10 agcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctct 109  Q
    ||||||| || |||||||||||||| ||||| ||||||||||||||| |||||||| || ||||||||||||||| |||||||||| ||| || ||||||    
T  9910357 agcaatagcagaaacaagtcttgtgacaaaccgttgcaaaacccatcaaaaataactatcaatcctaccaaaaactcgtgtaaccgtactttgtttctct 9910456  T
Q  110 tctgcagttgagcgcagttaaagcgtagttaagcacaggtaaaatcaccacctaagtatttg 171  Q
    |||||||||||||| |||||||||| |||| |||||| ||||||||||||||||||||||||    
T  9910457 tctgcagttgagcgaagttaaagcgcagttcagcacatgtaaaatcaccacctaagtatttg 9910518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 14951219 - 14951100
Alignment:
Q  11 gcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctctt 110  Q
    |||||| || |||||| ||||||| ||||| |||||||||||| |||||||||||||| || |||||||||||| ||||||| |||||  ||||||||||    
T  14951219 gcaatagcagaaacaaatcttgtgccaaaccgttgcaaaacccctccaaaataaccatcaaacctaccaaaaactcgtgtaatcgcacattgcttctctt 14951120  T
Q  111 ctgcagttgagcgcagttaa 130  Q
    ||||||||||||||| ||||    
T  14951119 ctgcagttgagcgcaattaa 14951100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 38531730 - 38531622
Alignment:
Q  21 aaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctcttctgcagttga 120  Q
    |||||| |||||||  ||||||||||||||||| ||||||| |||||| || ||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  38531730 aaacaaatcttgtgctaaactgttgcaaaaccc-tccaaaagaaccatcaaacctaccaaaaacccgtgtaaccgcaccttgcttttcttctgcagttga 38531632  T
Q  121 gcgcagttaa 130  Q
    || |||||||    
T  38531631 gcacagttaa 38531622  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 6186653 - 6186534
Alignment:
Q  11 gcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctctt 110  Q
    |||||| || |||||| ||||||||||||| |||||||||||| | ||||||||  || || | |||||||||| ||||||| |||||| | ||||||||    
T  6186653 gcaatagcaaaaacaaatcttgtgtcaaaccgttgcaaaaccccttcaaaataattatcaaacttaccaaaaactcgtgtaatcgcactttacttctctt 6186554  T
Q  111 ctgcagttgagcgcagttaa 130  Q
    ||||||||||||||| ||||    
T  6186553 ctgcagttgagcgcaattaa 6186534  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 33544181 - 33544244
Alignment:
Q  55 tccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctcttctgcagtt 118  Q
    |||||||||||||| || ||||||||||||||||| | ||||||  ||||| ||||||||||||    
T  33544181 tccaaaataaccatcaaccctaccaaaaacccgtgcagccgcaccttgcttatcttctgcagtt 33544244  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 27888567 - 27888643
Alignment:
Q  21 aaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgca 97  Q
    |||||| |||||||||||||  ||  ||||||  ||||||||||||||  | |||||||||||| | ||||||||||    
T  27888567 aaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccatcgaacctaccaaaaactcatgtaaccgca 27888643  T

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Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 171
Target Start/End: Complemental strand, 3763359 - 3763198
Alignment:
Q  10 agcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctct 109  Q
    ||||||| || |||||||||||||| |||||  ||||||||| |||||||||||| ||| |||||||||||||||| || |||| ||||| | |||||||    
T  3763359 agcaatagcagaaacaagtcttgtgccaaaccattgcaaaactcatccaaaataatcatcaatcctaccaaaaacctgtataactgcacttttcttctct 3763260  T
Q  110 tctgcagttgagcgcagttaaagcgtagttaagcacaggtaaaatcaccacctaagtatttg 171  Q
    |||||||||||||  |||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  3763259 tctgcagttgagcatagttaaagcgcagttaagcacaggtaaactcaccacgtaagtatttg 3763198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 5515072 - 5515181
Alignment:
Q  21 aaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctcttctgcagttga 120  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  5515072 aaacaagtcttgtgccaaactgttgcaaaatccatccaaaataaccatcaatcctaccaaaaacccgggtaaccgcactttgcttctcttctgcagttga 5515171  T
Q  121 gcgcagttaa 130  Q
    ||||||||||    
T  5515172 gcgcagttaa 5515181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 39580412 - 39580356
Alignment:
Q  12 caataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccat 68  Q
    ||||| ||||||||| ||||||||||||| |||| |||| | |||||||||||||||    
T  39580412 caatagcataaacaaatcttgtgtcaaaccgttgaaaaatctatccaaaataaccat 39580356  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 5515176 - 5515211
Alignment:
Q  136 agttaagcacaggtaaaatcaccacctaagtatttg 171  Q
    ||||||||||| ||||||||||||||||||||||||    
T  5515176 agttaagcacaagtaaaatcaccacctaagtatttg 5515211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 10181847 - 10181932
Alignment:
Q  13 aataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcac 98  Q
    |||| ||||||||| || |||| ||||| |||  ||||||  ||||||||| |||| || ||||||||||| || |||||||||||    
T  10181847 aatagcataaacaaatcatgtgccaaaccgttaaaaaacctctccaaaatagccatcaaacctaccaaaaatccatgtaaccgcac 10181932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 15050399 - 15050314
Alignment:
Q  11 gcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcac 98  Q
    |||||| || |||||| |||||||||| || |||| ||||||  |||||  ||||||| || |||||||||||| | |||||||||||    
T  15050399 gcaatagcagaaacaaatcttgtgtcataccgttgaaaaacctctccaa--taaccatcaaacctaccaaaaactcatgtaaccgcac 15050314  T

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Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 42269162 - 42269053
Alignment:
Q  21 aaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctcttctgcagttga 120  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||    
T  42269162 aaacaagtcttgtgccaaactgttgcaaaacccatccaaaataaccatcaatcctaccaaaaactcgggtaaccgcactttgcttctcttctgcagttga 42269063  T
Q  121 gcgcagttaa 130  Q
    ||| ||||||    
T  42269062 gcgtagttaa 42269053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 40600254 - 40600132
Alignment:
Q  8 taagcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttct 107  Q
    ||||||||| || |||||||||||||| ||||| |||||||||||| |||||||||||||| || |||||||||||| ||| |||| ||||| |||||||    
T  40600254 taagcaatagcaaaaacaagtcttgtgccaaaccgttgcaaaacccgtccaaaataaccatcaaacctaccaaaaactcgtataactgcactttgcttct 40600155  T
Q  108 cttctgcagttgagcgcagttaa 130  Q
    |||||||||||||||||||||||    
T  40600154 cttctgcagttgagcgcagttaa 40600132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 12156021 - 12156140
Alignment:
Q  11 gcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctctt 110  Q
    |||||| || |||||| |||||||||||||  ||||||||||| |||||||||||||| || |||||||||||| || |||| |||||  ||||||||||    
T  12156021 gcaatagcagaaacaaatcttgtgtcaaaccattgcaaaacccctccaaaataaccatcaaacctaccaaaaactcgcgtaatcgcaccttgcttctctt 12156120  T
Q  111 ctgcagttgagcgcagttaa 130  Q
    | ||||||||||||| ||||    
T  12156121 cagcagttgagcgcaattaa 12156140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 34574526 - 34574450
Alignment:
Q  55 tccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctcttctgcagttgagcgcagttaaa 131  Q
    |||||||||||||| || |||||||||||  |||| ||||||||  |||||||||||| |||||||||||| |||||    
T  34574526 tccaaaataaccatcaaacctaccaaaaaatcgtgcaaccgcaccttgcttctcttctacagttgagcgcaattaaa 34574450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 11470623 - 11470724
Alignment:
Q  21 aaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctcttctgcagttga 120  Q
    |||||| ||||||| ||||| |||||||||||| | ||||||| | || || |||||||||||| ||||||||| |||  || ||||||| |||| ||||    
T  11470623 aaacaaatcttgtgccaaaccgttgcaaaaccccttcaaaatagctatcaaacctaccaaaaactcgtgtaaccacacattgtttctcttttgcatttga 11470722  T
Q  121 gc 122  Q
    ||    
T  11470723 gc 11470724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 30248416 - 30248488
Alignment:
Q  58 aaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctcttctgcagttgagcgcagttaa 130  Q
    ||||||||| | || |||||||||||  |||| ||||| ||  ||||||||||||||||||||||||| ||||    
T  30248416 aaaataaccttcaaacctaccaaaaaatcgtgcaaccgtaccttgcttctcttctgcagttgagcgcaattaa 30248488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 42269063 - 42269023
Alignment:
Q  131 agcgtagttaagcacaggtaaaatcaccacctaagtatttg 171  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  42269063 agcgtagttaagcacaagtaaaatcaccacctaattatttg 42269023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 42221195 - 42221260
Alignment:
Q  55 tccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctcttctgcagttga 120  Q
    ||||||||||| || || ||||||||||||  ||| ||||||||  |||||||| |||||||||||    
T  42221195 tccaaaataactatcaaacctaccaaaaacttgtgcaaccgcaccttgcttctcatctgcagttga 42221260  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 24717798 - 24717907
Alignment:
Q  21 aaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctcttctgcagttga 120  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| ||  ||||||||||| |||||||||| |||||||||    
T  24717798 aaacaagtcttgtgccaaacagttgcaaaacccatccaaaataaccatcaatcctaccaaaaaaccaggtaaccgcactttgcttctcttttgcagttga 24717897  T
Q  121 gcgcagttaa 130  Q
    ||||||||||    
T  24717898 gcgcagttaa 24717907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 43048060 - 43047940
Alignment:
Q  10 agcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctct 109  Q
    ||||||| ||||||||| |||||||| |||| ||||||||| ||||||||||||||||| || ||||||||||| | ||||||||||||| || ||||||    
T  43048060 agcaatagcataaacaaatcttgtgtaaaaccgttgcaaaatccatccaaaataaccatcaaacctaccaaaaatctgtgtaaccgcactttgtttctct 43047961  T
Q  110 tctgcagttgagcgcagttaa 130  Q
    |||||||||||||||||||||    
T  43047960 tctgcagttgagcgcagttaa 43047940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 32979001 - 32979088
Alignment:
Q  11 gcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcac 98  Q
    ||||| |||||||||| ||||||| |||||||||  ||||||  |||||||||||||| || || ||||||||||| |||||||||||    
T  32979001 gcaatgacataaacaaatcttgtgccaaactgttaaaaaacctctccaaaataaccatcaaacccaccaaaaacccatgtaaccgcac 32979088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 26711933 - 26712019
Alignment:
Q  36 caaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctcttctgcagttgagc 122  Q
    ||||| |||| |||| || || ||||||||||| || |||||||||||||| |||||||||||  || |||||||| ||| ||||||    
T  26711933 caaaccgttgaaaaatccctctaaaataaccatcaaacctaccaaaaacccatgtaaccgcaccttgattctcttccgcacttgagc 26712019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 36582668 - 36582712
Alignment:
Q  55 tccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcact 99  Q
    |||||||||||||| || |||||||||||||| ||||||||||||    
T  36582668 tccaaaataaccatcaaacctaccaaaaacccatgtaaccgcact 36582712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 10772646 - 10772754
Alignment:
Q  21 aaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctcttctgcagttga 120  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| ||| | ||||||||||||| ||||||    
T  10772646 aaacaagtcttgtgccaaaccgttgcaaaacccatccaaaataaccatcaaacctaccaaaaacccgtgtaactgca-tttgcttctcttctgtagttga 10772744  T
Q  121 gcgcagttaa 130  Q
     |||||||||    
T  10772745 acgcagttaa 10772754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 30845164 - 30845283
Alignment:
Q  11 gcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctctt 110  Q
    |||||| || |||||| ||||||||||||| |||||||||||| |||||||||||||| || ||||||||||| ||  ||||||||||  ||||||||||    
T  30845164 gcaatagcagaaacaaatcttgtgtcaaaccgttgcaaaacccctccaaaataaccatcaaacctaccaaaaatccaggtaaccgcaccttgcttctctt 30845263  T
Q  111 ctgcagttgagcgcagttaa 130  Q
    || |||||||||||||||||    
T  30845264 ctacagttgagcgcagttaa 30845283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 24842939 - 24843047
Alignment:
Q  21 aaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctcttctgcagttga 120  Q
    |||||| |||||||  |||||||||  |||||| ||||||| |||||| || ||||||||||||||||||||||||||  ||||||||||||||||||||    
T  24842939 aaacaaatcttgtgctaaactgttgttaaaccc-tccaaaagaaccatcaaacctaccaaaaacccgtgtaaccgcaccttgcttctcttctgcagttga 24843037  T
Q  121 gcgcagttaa 130  Q
    ||||| ||||    
T  24843038 gcgcaattaa 24843047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 24350569 - 24350450
Alignment:
Q  11 gcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctctt 110  Q
    |||||| || |||||| | |||||  |||| |||||||||||| |||||||||||||| || | |||||||||| ||||||| | |||  ||||||||||    
T  24350569 gcaatagcagaaacaaattttgtgctaaaccgttgcaaaacccctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacacattgcttctctt 24350470  T
Q  111 ctgcagttgagcgcagttaa 130  Q
    ||| ||||||||||| ||||    
T  24350469 ctgtagttgagcgcaattaa 24350450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 9566660 - 9566703
Alignment:
Q  55 tccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcac 98  Q
    |||||||||||||| || |||||||||||||| |||||||||||    
T  9566660 tccaaaataaccatcaaacctaccaaaaacccatgtaaccgcac 9566703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 10670380 - 10670293
Alignment:
Q  11 gcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcac 98  Q
    |||||| || |||||| ||||||||||||| |||| ||||||  ||||||||||| || ||  |||| ||||| || |||||||||||    
T  10670380 gcaatagcagaaacaaatcttgtgtcaaaccgttgaaaaacctctccaaaataactatcaaatctactaaaaatccatgtaaccgcac 10670293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 32747943 - 32747886
Alignment:
Q  73 cctaccaaaaacccgtgtaaccgcactctgcttctcttctgcagttgagcgcagttaa 130  Q
    |||| ||||||  |||| ||||||||  ||||||||||||||||||||||||| ||||    
T  32747943 cctaacaaaaaatcgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaa 32747886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 2775 - 2655
Alignment:
Q  10 agcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctct 109  Q
    ||||||| || |||||||||||||| ||||| |||||||| |||||| ||||||| ||| ||||||||||||||| | |||||||||||| |||||||||    
T  2775 agcaatagcagaaacaagtcttgtgccaaaccgttgcaaatcccatctaaaataatcatcaatcctaccaaaaactcatgtaaccgcactttgcttctct 2676  T
Q  110 tctgcagttgagcgcagttaa 130  Q
    ||||||||| ||||| |||||    
T  2675 tctgcagttcagcgcggttaa 2655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 171
Target Start/End: Complemental strand, 2077790 - 2077639
Alignment:
Q  10 agcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctct 109  Q
    ||||||| |||||||||||||||||  |||| ||||||||||||||||||||||| ||| || |||||| ||||| | |||||||||||| | ||| |||    
T  2077790 agcaatagcataaacaagtcttgtgcaaaaccgttgcaaaacccatccaaaataatcatcaaacctacc-aaaactcctgtaaccgcactttacttttct 2077692  T
Q  110 tctgcagttgagcgcagttaaagcgtagttaagcacaggtaaaatcaccacctaagtatttg 171  Q
    ||||||||| |||         ||| | ||||||| ||||||||||||||||||||||||||    
T  2077691 tctgcagttcagc---------gcgcaattaagcataggtaaaatcaccacctaagtatttg 2077639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 10494579 - 10494698
Alignment:
Q  11 gcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctctt 110  Q
    |||||| || |||||| ||||||| |||||  ||||||||||| |  ||||||||||| || ||||||||||| ||||||||||||||| |  |||||||    
T  10494579 gcaatagcagaaacaaatcttgtgccaaaccattgcaaaacccctataaaataaccatcaaacctaccaaaaatccgtgtaaccgcactttctttctctt 10494678  T
Q  111 ctgcagttgagcgcagttaa 130  Q
    ||||||||||||| ||||||    
T  10494679 ctgcagttgagcgtagttaa 10494698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 14351573 - 14351454
Alignment:
Q  11 gcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctctt 110  Q
    |||||| || |||||| ||||||| |||||  ||||||||||| |||||||||||||| || |||||||||||| || |||| |||||  ||||||||||    
T  14351573 gcaatagcagaaacaaatcttgtgccaaaccattgcaaaacccctccaaaataaccatcaaacctaccaaaaactcgcgtaatcgcacattgcttctctt 14351474  T
Q  111 ctgcagttgagcgcagttaa 130  Q
    | ||||||||||||| ||||    
T  14351473 cagcagttgagcgcaattaa 14351454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 11814389 - 11814500
Alignment:
Q  11 gcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaac--ccgtgtaaccgcactctgcttctc 108  Q
    |||||| || ||| || ||||||| | |||||||||||||||| |||||| ||||||| || |||| ||||||   ||||||||| ||||| ||||||||    
T  11814389 gcaatagcagaaataaatcttgtgcctaactgttgcaaaacccctccaaagtaaccatcaaacctagcaaaaaaatccgtgtaactgcactttgcttctc 11814488  T
Q  109 ttctgcagttga 120  Q
    ||||||||||||    
T  11814489 ttctgcagttga 11814500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 26842321 - 26842245
Alignment:
Q  21 aaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgca 97  Q
    |||||| |||||||||| || |||| ||||||  |||||| ||||||| || |||||||||||||| |||| |||||    
T  26842321 aaacaaatcttgtgtcataccgttgaaaaacctctccaaactaaccatcaaacctaccaaaaacccatgtacccgca 26842245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 52635427 - 52635545
Alignment:
Q  12 caataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctcttc 111  Q
    ||||| || |||||| ||||||| ||||  ||||||||| || |||||||||||||| || |||||||||||| ||||||| | |||  |||||||||||    
T  52635427 caatagcagaaacaaatcttgtgccaaatcgttgcaaaatcc-tccaaaataaccatcaaacctaccaaaaactcgtgtaatcacacattgcttctcttc 52635525  T
Q  112 tgcagttgagcgcagttaaa 131  Q
    ||||| |||| ||| |||||    
T  52635526 tgcaggtgagtgcaattaaa 52635545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 55728445 - 55728526
Alignment:
Q  49 aacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctcttctgcagttgagcgcagttaaa 131  Q
    ||||| |||||||||||||| || |||||||||| | ||||||| |||||| ||||| ||||||||||||||||||| |||||    
T  55728445 aacccctccaaaataaccatcaaacctaccaaaa-ctcgtgtaatcgcactttgcttttcttctgcagttgagcgcaattaaa 55728526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 42677961 - 42677875
Alignment:
Q  12 caataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcac 98  Q
    |||||||||||| || ||||||  |||||||||| ||||||  | ||||||||||||||| ||||||| |||| | |||||||||||    
T  42677961 caataacataaaaaaatcttgtaccaaactgttgaaaaacctcttcaaaataaccatgaaacctaccacaaactcatgtaaccgcac 42677875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 2675 - 2750
Alignment:
Q  55 tccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctcttctgcagttgagcgcagttaa 130  Q
    |||||||||||||| || |||||||||||  | || ||| ||||  ||||||||||||||||||||| ||| ||||    
T  2675 tccaaaataaccatcaaacctaccaaaaattcttgcaactgcaccttgcttctcttctgcagttgagggcaattaa 2750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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