View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9119J-LTR4-TNT-insertion-13 (Length: 269)
Name: F9119J-LTR4-TNT-insertion-13
Description: F9119J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9119J-LTR4-TNT-insertion-13 |
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| [»] scaffold0150 (2 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 42552182 - 42551932
Alignment:
| Q |
10 |
ccacaatagcataccactttgacagagtgtctgggtcaccatcaactccaaacttacaagcaatagctatagctataacaatctacaaacaaaattcaaa |
109 |
Q |
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| T |
42552182 |
ccacaatagcataccactttgacagagtgtctgggtcaccatcaactccaaacttacaagcaatagctatagctataacaatctacaaacaaaattcaaa |
42552083 |
T |
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| Q |
110 |
tttaattagtaacaagtaaactttacagttcaatatagtgtgtatgtatgtattgcaaataattttgttaaacaaacctgacaaatgaacatttgaatac |
209 |
Q |
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| T |
42552082 |
tttaattagtaacaagtaaactttacagttcaatatagtgtgtatgtatgtattgcaaataattttgttaaacaaacctgacaaatgaacatttgaatac |
42551983 |
T |
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| Q |
210 |
ctccttcaatgaaaagagttcttcttccaaatttatcaacagtagcaattg |
260 |
Q |
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| T |
42551982 |
ctccttcaatgaaaagagttcttcttccaaatttatcaacagtagcaattg |
42551932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 181 - 265
Target Start/End: Original strand, 18234198 - 18234282
Alignment:
| Q |
181 |
acaaacctgacaaatgaacatttgaatacctccttcaatgaaaagagttcttcttccaaatttatcaacagtagcaattggtacg |
265 |
Q |
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| T |
18234198 |
acaaacctgacaaataaacatttgaataccgccttctatgaaaagagttcttcttccaaatttatcaacagtggcgattgatacg |
18234282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 18234033 - 18234129
Alignment:
| Q |
12 |
acaatagcataccactttgacagagtgtctgggtcaccatcaactccaaacttacaagcaatagctatagctataacaatctacaaacaaaattcaa |
108 |
Q |
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| T |
18234033 |
acaattgcataccactttggcaaaacgcctgggtcaccacttactccaaatttaagcgcaataaatatagctataacaatctgcaaacaaaattcaa |
18234129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 1473 - 1505
Alignment:
| Q |
83 |
tataacaatctacaaacaaaattcaaatttaat |
115 |
Q |
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| T |
1473 |
tataacaatctacaaacaaaattcaaatttaat |
1505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 16639 - 16671
Alignment:
| Q |
83 |
tataacaatctacaaacaaaattcaaatttaat |
115 |
Q |
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| T |
16639 |
tataacaatctacaaacaaaattcaaatttaat |
16671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 30866226 - 30866258
Alignment:
| Q |
83 |
tataacaatctacaaacaaaattcaaatttaat |
115 |
Q |
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| T |
30866226 |
tataacaatctacaaacaaaattcaaatttaat |
30866258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 131503 - 131471
Alignment:
| Q |
83 |
tataacaatctacaaacaaaattcaaatttaat |
115 |
Q |
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| T |
131503 |
tataacaatctgcaaacaaaattcaaatttaat |
131471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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