View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9119J-LTR4-TNT-insertion-14 (Length: 396)
Name: F9119J-LTR4-TNT-insertion-14
Description: F9119J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9119J-LTR4-TNT-insertion-14 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 9 - 386
Target Start/End: Complemental strand, 6413303 - 6412926
Alignment:
| Q |
9 |
catgaaccaaatgaatcgaacttgagttgaaagtaaactcctacaagtatttacaataacaccaacttctgaattgtgagcaaatttagtcgaaatgtcg |
108 |
Q |
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| T |
6413303 |
catgaaccaaatgaatcgaacttgagttgaaagtaaactcctacaagtatttacaataacaccaacttctgaattgtgagcaaatttagtcgaaatgtcg |
6413204 |
T |
|
| Q |
109 |
tctacaactagcttgctatctagttctaactccactcgagtaaaactgaaattcaaacgccacaaaagcacttgacgtaggcctatacttccactccttg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6413203 |
tctacaactagcttgctatctagttctaactccactcgagtaaaactgaaattcaaacgccacaaaagcacttgacgtaggcctatacttccactccttg |
6413104 |
T |
|
| Q |
209 |
aggtgttggttggccttttttcacactatttgagcacaaatgaattcaccnnnnnnncgttcctaacacacatacaaacaattttatctgtaaagattgc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6413103 |
aggtgttggttggccttttttcacactatttgagcacaaatgaattcacctttttttcgttcctaacacacatacaaacaattttatctgtaaagattgc |
6413004 |
T |
|
| Q |
309 |
ttgaacctggttacacttgacttcacctgtcatcggaaactgtccaactatgttaactcatacccgctactttgatta |
386 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6413003 |
ttgaacctggttacacttgacttcacctgtcatcggaaactgtccaactatgttaactcatacccgctactttgatta |
6412926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 258
Target Start/End: Original strand, 30780091 - 30780249
Alignment:
| Q |
101 |
aaatgtcgtctacaactagcttgctatctagttctaactccactcgagtaaaactgaaattcaaacgccacaaaagcacttgacgtaggcc-tatacttc |
199 |
Q |
| |
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|||| ||||| || |||||||||||||||||||||| | |||| |||||||||| |||||| | ||||||||| |||| |||||| || ||| |
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| T |
30780091 |
aaatatcgtccaccactagcttgctatctagttctatcgccacacgagtaaaacctgaattcataaaccacaaaagtgcttgctttaggccacatgcttt |
30780190 |
T |
|
| Q |
200 |
cactccttgaggtgttggttggccttttttcacactatttgagcacaaatgaattcacc |
258 |
Q |
| |
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| || |||||| ||| ||||| || ||||||| | | ||||||||||||| |||||||| |
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| T |
30780191 |
cgcttcttgagatgtcggttgaccatttttcatattgtttgagcacaaataaattcacc |
30780249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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