View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9119J-LTR4-TNT-insertion-6 (Length: 582)
Name: F9119J-LTR4-TNT-insertion-6
Description: F9119J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9119J-LTR4-TNT-insertion-6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 564; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 9 - 572
Target Start/End: Complemental strand, 27066022 - 27065459
Alignment:
| Q |
9 |
caactaactctctcagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaagatgttgaaggaagggacagttatgcc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27066022 |
caactaactctctcagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaagatgttgaaggaagggacagttatgcc |
27065923 |
T |
|
| Q |
109 |
tatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatcttctaagttgaatgagatgaag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27065922 |
tatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatcttctaagttgaatgagatgaag |
27065823 |
T |
|
| Q |
209 |
caagttttcaaggtgtccgagaattcttcgatgaataagatgatggtggatgcgttgagtgagtgcgagagggcgccgagtgtaggtgaaacgaagcgtt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27065822 |
caagttttcaaggtgtccgagaattcttcgatgaataagatgatggtggatgcgttgagtgagtgcgagagggcgccgagtgtaggtgaaacgaagcgtt |
27065723 |
T |
|
| Q |
309 |
gtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggtcacagtgttactgttcggtccactgagaatgtaaatggggcgggcaagga |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27065722 |
gtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggtcacagtgttactgttcggtccactgagaatgtaaatggggcgggcaagga |
27065623 |
T |
|
| Q |
409 |
tgtcatggtgggtaaagttaaggggataaatggtggaaaagttactgaatctgtatcgtgtcaccagagtttgtttccttatttgttatactactgtcac |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27065622 |
tgtcatggtgggtaaagttaaggggataaatggtggaaaagttactgaatctgtatcgtgtcaccagagtttgtttccttatttgttatactactgtcac |
27065523 |
T |
|
| Q |
509 |
tcggttccaaatgttcatgtctatgaagcggatctattggatccagtttctaaggcaaagatta |
572 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27065522 |
tcggttccaaatgttcatgtctatgaagcggatctattggatccagtttctaaggcaaagatta |
27065459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 23 - 552
Target Start/End: Complemental strand, 27079725 - 27079196
Alignment:
| Q |
23 |
agtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaagatgttgaaggaagggacagttatgcctatgccagatataa |
122 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| ||||| | |
|
|
| T |
27079725 |
agtgaaagtgttagtttggcaaaaaaatgggttcaacctggtaagtttttccgagaaaagatgttgaaacaaggggtggttatgcctatgccggatatta |
27079626 |
T |
|
| Q |
123 |
gggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatcttctaagttgaatgagatgaagcaagttttcaaggt |
222 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| |||||||||||||||| || |||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
27079625 |
aggataaattaccgccaaggtcgtttttaccacgtaccattttgaccaaattaccctttgcatcttctaagttgaatgagttgaagcaagtttttaaggt |
27079526 |
T |
|
| Q |
223 |
gtccgagaattcttcgatgaataagatgatggtggatgcgttgagtgagtgcgagagggcgccgagtgtaggtgaaacgaagcgttgtgtgggttctctt |
322 |
Q |
| |
|
||| |||||||| |||||| |||||||||| ||||| | ||| ||||||| |||||||| |||||| | ||||| || ||||||||||| ||||| ||| |
|
|
| T |
27079525 |
gtctgagaattcctcgatggataagatgatagtggactcattgggtgagtgtgagagggcaccgagtatgggtgagacaaagcgttgtgttggttcactt |
27079426 |
T |
|
| Q |
323 |
gaggatatgattgattttgcaacttctgttttgggtcacagtgttactgttcggtccactgagaatgtaaatggggcgggcaaggatgtcatggtgggta |
422 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| || ||| |||||||| || ||||||| ||||||||| ||||||| |||||||||| || | |
|
|
| T |
27079425 |
gaggatatgattgactttgcaacttcagttttgggccatgatgtaactgttcgatcaactgagagtgtaaatggatcgggcaaaaatgtcatggttggaa |
27079326 |
T |
|
| Q |
423 |
aagttaaggggataaatggtggaaaagttactgaatctgtatcgtgtcaccagagtttgtttccttatttgttatactactgtcactcggttccaaatgt |
522 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||||||||| || |||||||| |||||||||||||||||| ||||||| || |||||||||||||| || |
|
|
| T |
27079325 |
gggttaaagggatcaatgggggtaaagttactgaatctgtgtcatgtcaccaaagtttgtttccttatttgctatactattgccactcggttccaaaggt |
27079226 |
T |
|
| Q |
523 |
tcatgtctatgaagcggatctattggatcc |
552 |
Q |
| |
|
|| ||| |||||||| ||||| || ||||| |
|
|
| T |
27079225 |
tcgtgtttatgaagcagatcttttagatcc |
27079196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 51 - 549
Target Start/End: Complemental strand, 27053538 - 27053040
Alignment:
| Q |
51 |
tggttcaacctggtaagtttttccgggagaagatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgttttt |
150 |
Q |
| |
|
||||| |||| |||||||||||||| || | |||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| || ||||||||||| |
|
|
| T |
27053538 |
tggttgaaccaggtaagtttttccgcgaaaggatgttgaaggaagggactgttatgcctatgccagatacaagggataagttaccacctaggtcgttttt |
27053439 |
T |
|
| Q |
151 |
gcctcgttccattttgaccaaattgccatttgcatcttctaagttgaatgagatgaagcaagttttcaaggtgtccgagaattcttcgatgaataagatg |
250 |
Q |
| |
|
||| ||||||||||||| ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||| || ||||| | ||| | |||||| |
|
|
| T |
27053438 |
gccacgttccattttgatcaaattgccctttgcatcttctaagttgaacaatatgaagcaagttttcaaggtgtctgaaaattcctttatggaaaagatg |
27053339 |
T |
|
| Q |
251 |
atggtggatgcgttgagtgagtgcgagagggcgccgagtgtaggtgaaacgaagcgttgtgtgggttctcttgaggatatgattgattttgcaacttctg |
350 |
Q |
| |
|
|| ||||| | ||||||||||| || || ||||| ||| |||||| | ||||||||||| ||||| |||||||| |||||||| |||||||||||| |
|
|
| T |
27053338 |
atagtggactcattgagtgagtgtgaaagagcgccaagtaaaggtgagatcaagcgttgtgtaggttcgcttgaggacatgattgactttgcaacttcta |
27053239 |
T |
|
| Q |
351 |
ttttgggtcacagtgttactgttcggtccactgagaatgtaaatggggcgggcaaggatgtcatggtgggtaaagttaaggggataaatggtggaaaagt |
450 |
Q |
| |
|
|||||||| || ||| || ||||||||||||||||||||||||||| || ||| |||| ||||| ||| |||| |||| |||||||||||| || || |
|
|
| T |
27053238 |
ttttgggtagcaatgtgacggttcggtccactgagaatgtaaatgggtcgaacaacaatgttatggtaggtcaagtaaaggagataaatggtgggaacgt |
27053139 |
T |
|
| Q |
451 |
tactgaatctgtatcgtgtcaccagagtttgtttccttatttgttatactactgtcactcggttccaaatgttcatgtctatgaagcggatctattgga |
549 |
Q |
| |
|
|| || || || || ||||| || |||||||||||||| ||| |||| |||||||| ||||| |||||| ||| | ||||||||| |||| ||||| |
|
|
| T |
27053138 |
tatggagtcagtgtcttgtcatcaaagtttgtttccttacttgctatattactgtcattcggtgccaaatattcgaatttatgaagcgaatcttttgga |
27053040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 308 - 516
Target Start/End: Original strand, 14866315 - 14866523
Alignment:
| Q |
308 |
tgtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggtcacagtgttactgttcggtccactgagaatgtaaatggggcgggcaagg |
407 |
Q |
| |
|
||||| || ||| ||||||||||||| || ||||||||||| |||||||||| | ||| |||||| | |||||||||||||||||| || |||| |
|
|
| T |
14866315 |
tgtgttgggtctattgaggatatgatcgactttgcaacttcggttttgggtcgaaatgtggtggttcggactactgagaatgtaaatgggtcgaagaagg |
14866414 |
T |
|
| Q |
408 |
atgtcatggtgggtaaagttaaggggataaatggtggaaaagttactgaatctgtatcgtgtcaccagagtttgtttccttatttgttatactactgtca |
507 |
Q |
| |
|
|||| ||||||||| ||||| ||||| ||||| || ||||| || ||||| |||||||| |||||||||||||| |||||| | || || ||||| |
|
|
| T |
14866415 |
atgttatggtgggtcgggttaatgggattaatggcgggaaagtgacccggtctgtttcgtgtcatcagagtttgtttccgtatttgctttattattgtca |
14866514 |
T |
|
| Q |
508 |
ctcggttcc |
516 |
Q |
| |
|
||||||||| |
|
|
| T |
14866515 |
ctcggttcc |
14866523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 14866036 - 14866157
Alignment:
| Q |
29 |
agtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaagatgttgaaggaagggacagttatgcctatgccagatataagggata |
128 |
Q |
| |
|
||||||||||||| |||||| |||| | |||||||||||||| | ||||| |||||||| ||||| || || ||||||||||| ||||| || |||| |
|
|
| T |
14866036 |
agtggtagtttggtaaaaaaatgggttgagcctggtaagttttttagagagaaaatgttgaaagaaggtacggtaatgcctatgcctgatattagagata |
14866135 |
T |
|
| Q |
129 |
aattaccgccaaggtcgttttt |
150 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
14866136 |
aattacctaaaaggtcgttttt |
14866157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 516
Target Start/End: Original strand, 55980222 - 55980433
Alignment:
| Q |
308 |
tgtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggtcacagtgttactgttcggtccactgagaatgtaaatggggcgggcaagg |
407 |
Q |
| |
|
|||||||| ||| ||||||||||||| || |||||| |||| |||||||||| | |||| |||||| | |||||||||||||||||| || |||| |
|
|
| T |
55980222 |
tgtgtggggtctattgaggatatgatcgactttgcagcttcggttttgggtcgaaatgttgtggttcggactactgagaatgtaaatgggtcgaagaagg |
55980321 |
T |
|
| Q |
408 |
atgtcatggtgggtaaagttaaggggat---aaatggtggaaaagttactgaatctgtatcgtgtcaccagagtttgtttccttatttgttatactactg |
504 |
Q |
| |
|
|| | ||||||||| | |||| ||||| |||||||||||| | || | |||| |||||||| ||||| ||||||| |||||| | || || || |
|
|
| T |
55980322 |
atcttatggtgggtcatgttagtgggattaataatggtggaaaaatgacccgaactgtttcgtgtcatcagagcttgtttcagtatttgctttattattg |
55980421 |
T |
|
| Q |
505 |
tcactcggttcc |
516 |
Q |
| |
|
|||||||||||| |
|
|
| T |
55980422 |
tcactcggttcc |
55980433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3410 times since January 2019
Visitors: 854