View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9119J-LTR4-TNT-insertion-9 (Length: 405)
Name: F9119J-LTR4-TNT-insertion-9
Description: F9119J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9119J-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 312
Target Start/End: Original strand, 6550498 - 6550800
Alignment:
| Q |
10 |
taatactctccctcacatgaaaattatcacaaattaaggagaaggaataaatgaataaaagaaaaagaataacaactttattaggagaaagagagagtaa |
109 |
Q |
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| T |
6550498 |
taatactctccctcacatgaaaattatcacaaattaaggagaaggaataaatgaataaaagaaaaagaataacaactttattaggagaaagagagagtaa |
6550597 |
T |
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| Q |
110 |
taaactaggatattgtatatattaaaaatgtttatcaacactttaccaaaaaagatgtatcgacgtgagttggacctatcagattcagagaaaagtctaa |
209 |
Q |
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| T |
6550598 |
taaactaggatattgtatatattaaaaatgtttatcaacactttaccaaaaaagatgtatcgacgtgagttggacctatcagattcagagaaaagtctaa |
6550697 |
T |
|
| Q |
210 |
agatttaaataatatttgaagaagtgagaaatcaaagattcaaattccaatgtttgcgtgtcaatatttatacttttatagagctactaaccgagttact |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6550698 |
agatttaaataatatttgaagaagtgagaaatcaaagattcaaattccaatgtttgcgtgtcaatatttatacttttatagagctactaaccgagttact |
6550797 |
T |
|
| Q |
310 |
ctt |
312 |
Q |
| |
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||| |
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| T |
6550798 |
ctt |
6550800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 395
Target Start/End: Original strand, 6550852 - 6550885
Alignment:
| Q |
362 |
cttttttaacatttttgggtttcaacaataatta |
395 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6550852 |
cttttttaacatttttgggtttcaacaataatta |
6550885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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