View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9134J-LTR4-TNT-insertion-1 (Length: 199)
Name: F9134J-LTR4-TNT-insertion-1
Description: F9134J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9134J-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 14518361 - 14518176
Alignment:
| Q |
4 |
aacactgatggcattcacttgcaaaatacacaggatgtagaaattcaacactctaatattggaactggtaagacattaaattaatttattttatatgact |
103 |
Q |
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| T |
14518361 |
aacactgatggcattcacttgcaaaatacacaggatgtagaaattcaacactctaatattggaactggtaagacattaaattaatttattttatatgact |
14518262 |
T |
|
| Q |
104 |
atctatctagcatcggcaattcggattaaagaagtgtcttgtatccgacactgagacgacattgacacgtgtggtttcgttcaatt |
189 |
Q |
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| T |
14518261 |
atctatctagcatcggcaattcggattaaagaagtgtcttgtatccgacactgagacgacattgacacgtgtggtttcgttcaatt |
14518176 |
T |
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