View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9134J-LTR4-TNT-insertion-5 (Length: 302)
Name: F9134J-LTR4-TNT-insertion-5
Description: F9134J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9134J-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 11 - 292
Target Start/End: Original strand, 737966 - 738247
Alignment:
| Q |
11 |
agtcccacattcgctagacaagatcattcgagtaccttaagctctcattcgactacaagatctatagaacattaaggcaaatctcaagcatatgtatgat |
110 |
Q |
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| T |
737966 |
agtcccacattcgctagacaagatcattcgagtaccttaagctctcattcgactacaagatctatagaacattaaggcaaatctcaagcatatgtatgat |
738065 |
T |
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| Q |
111 |
ggaccatcctaaagcaaacatatgatttttacctatttttaatcagggattaagatctgattgcttaagggcnnnnnnnngagatttttatattgttaaa |
210 |
Q |
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| T |
738066 |
ggaccatcctaaagcaaacatatgatttttacctatttttaatcagggattaagatctgattgcttaagggcaaaaaaaagagatttttatattgttaaa |
738165 |
T |
|
| Q |
211 |
gtcattacttacagagagatgttatgtaaagtaaaaaataattgtgtttatttactaccataaaatgtacttaaatttatta |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
738166 |
gtcattacttacagagagatgttatgtaaagtaaaaaataattgtgtttatttactaccataaaatgtacttaaatttatta |
738247 |
T |
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