View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9134J-LTR4-TNT-insertion-6 (Length: 317)
Name: F9134J-LTR4-TNT-insertion-6
Description: F9134J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9134J-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 307
Target Start/End: Original strand, 15423046 - 15423345
Alignment:
| Q |
8 |
gagaatcacatgggtgagaggttcagcgagaggaaattgtggaagaaaggtgagtgttaataatttactgtaaaaacagggttannnnnnncttgttagg |
107 |
Q |
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| T |
15423046 |
gagaatcacatgggtgagaggttcagcgagaggaaattgtggaagaaaggtgagtgttaataatttactgtaaaaacagggttatttttttcttgttagg |
15423145 |
T |
|
| Q |
108 |
gtgtaatcagttttttaggatgtaactaggtttattaagtgcttgttgttttgtatttttctcattcattactcaaagcattatttggtttaaaaattcg |
207 |
Q |
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| T |
15423146 |
gtgtaatcagttttttaggatgtaactaggtttattaagtgcttgttgttttgtatttttctcattcattactcaaagcattatttggtttaaaaattcg |
15423245 |
T |
|
| Q |
208 |
gtagtttaaattcttcggctgaatactaccaacaatttggggcatttgctcggatacaaacctagttttcttcaatcgaataattgggcccaagttatta |
307 |
Q |
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| T |
15423246 |
gtagtttaaattcttcggctgaatactaccaacaatttggggcatttgctcggatacaaacctagttttcttcaatcgaataattgggcccaagttatta |
15423345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 15081589 - 15081535
Alignment:
| Q |
196 |
tttaaaaattcggtagtttaaattcttcggctgaatactaccaacaatttggggc |
250 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||| || || ||||||| |
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| T |
15081589 |
tttaaaaattcggtattttaaattcatcggctgaatactacaaaaaaattggggc |
15081535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 15431536 - 15431580
Alignment:
| Q |
238 |
aacaatttggggcatttgctcggatacaaacctagttttcttcaa |
282 |
Q |
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| T |
15431536 |
aacaaattggggcttttggttggatacaaacctagttttcttcaa |
15431580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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