View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9134J-LTR4-TNT-insertion-8 (Length: 613)
Name: F9134J-LTR4-TNT-insertion-8
Description: F9134J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9134J-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 574; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 23 - 604
Target Start/End: Original strand, 25791946 - 25792527
Alignment:
| Q |
23 |
attgaagatagaaattattaaaagcggttaacatatgttactgcacaaggcttgtaaccttatgcatgtcacactagcaaaattacattactctaagttc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25791946 |
attgaagatagaaattattaaaagcggttaacatatgttactgcacaaggcttgtaaccttatgcatgtcacactagcaaaattacattactctaagttc |
25792045 |
T |
|
| Q |
123 |
tgcaatctcagtacgtaggaaaaactatgttacaagttacaacagaaaacaaccaagcacttgataaaagatcaaacgtagatagatactagagaaggct |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25792046 |
tgcaatctcagtacgtaggaaaaactatgttacaagttacaacagaaaacaaccaagcacttgataaaagatcaaacgtagacagatactagagaaggct |
25792145 |
T |
|
| Q |
223 |
attcatgattaaacagcatgttcctcatgtagaagtccttgatcaaagtgccaaacacctgcaagccacaatatataacaatatataaatttcattagaa |
322 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25792146 |
attcatgattaaacagcatgttcctcatgtagaagtctttgatcaaagtgccaaacacctgcaagccacaatatataacaatatataaatttcattagaa |
25792245 |
T |
|
| Q |
323 |
cttaaagagtgtccaccacatacgaacaccggatacaacacatacatttagacactgatagtaatttaagaaaatataagtgaatcagtgattgaaagta |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25792246 |
cttaaagagtgtccaccacatacgaacaccggatacaacacatacatttagacactgatagtaatttaagaaaatataagtgaatcagtgattgaaagta |
25792345 |
T |
|
| Q |
423 |
accacgcacacgtgtcaatatcagacattgacatgtgtcggacaccagacacattttaatgtgaagtgtcggtgctacatactaattgataggtgttatg |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25792346 |
accacgcacacgtgtcaatatcagacattgacatgtgtcggacaccagacacattttaatgtgaagtgtcggtgctacatactaattgataggtgttatg |
25792445 |
T |
|
| Q |
523 |
tgtatggcaaaatatgtggaccaatatgaaatatgattgtagttatatacataccatgaccctttccaacccttctcaattg |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25792446 |
tgtatggcaaaatatgtggaccaatatgaaatatgattgtagttatatacataccatgaccctttccaacccttctcaattg |
25792527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 418
Target Start/End: Original strand, 21238713 - 21238760
Alignment:
| Q |
371 |
tagacactgatagtaatttaagaaaatataagtgaatcagtgattgaa |
418 |
Q |
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|||||||||||| ||||||||||||||| |||||| | |||||||||| |
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|
| T |
21238713 |
tagacactgataataatttaagaaaataaaagtgagtgagtgattgaa |
21238760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 504
Target Start/End: Original strand, 15365611 - 15365664
Alignment:
| Q |
451 |
tgacatgtgtcggacaccagacacattttaatgtgaagtgtcggtgctacatac |
504 |
Q |
| |
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||||| ||||||||||||||||||| |||||||| |||||| |||||||||| |
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|
| T |
15365611 |
tgacacgtgtcggacaccagacacactttaatgtatagtgtcactgctacatac |
15365664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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